Atomistry » Magnesium » PDB 2jg2-2msd » 2jja
Atomistry »
  Magnesium »
    PDB 2jg2-2msd »
      2jja »

Magnesium in PDB 2jja: Crystal Structure of Gna with Synthetic Copper Base Pair

Protein crystallography data

The structure of Crystal Structure of Gna with Synthetic Copper Base Pair, PDB code: 2jja was solved by M.K.Schlegel, L.-O.Essen, E.Meggers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.3
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 18.160, 48.590, 59.870, 90.00, 90.00, 90.00
R / Rfree (%) 12.4 / 14.8

Other elements in 2jja:

The structure of Crystal Structure of Gna with Synthetic Copper Base Pair also contains other interesting chemical elements:

Cobalt (Co) 2 atoms
Copper (Cu) 1 atom
Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Gna with Synthetic Copper Base Pair (pdb code 2jja). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Gna with Synthetic Copper Base Pair, PDB code: 2jja:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2jja

Go back to Magnesium Binding Sites List in 2jja
Magnesium binding site 1 out of 2 in the Crystal Structure of Gna with Synthetic Copper Base Pair


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Gna with Synthetic Copper Base Pair within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:22.7
occ:1.00
O A:HOH2060 2.3 22.1 1.0
O4 A:ZHP6 4.4 16.9 1.0

Magnesium binding site 2 out of 2 in 2jja

Go back to Magnesium Binding Sites List in 2jja
Magnesium binding site 2 out of 2 in the Crystal Structure of Gna with Synthetic Copper Base Pair


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Gna with Synthetic Copper Base Pair within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:24.8
occ:0.50
O A:HOH2072 2.3 38.7 1.0
O A:HOH2073 2.4 39.0 1.0
O A:HOH2036 2.5 51.9 1.0
O2P A:ZGU8 3.9 16.9 1.0
O A:HOH2063 4.0 41.0 1.0
O A:HOH2069 4.2 28.8 1.0
O A:HOH2034 4.3 48.2 1.0
O A:HOH2070 4.8 31.4 1.0

Reference:

M.K.Schlegel, L.-O.Essen, E.Meggers. Duplex Structure of A Minimal Nucleic Acid. J.Am.Chem.Soc. V. 130 8158 2008.
ISSN: ISSN 0002-7863
PubMed: 18529005
DOI: 10.1021/JA802788G
Page generated: Mon Dec 14 07:29:50 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy