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Magnesium in PDB 2jjx: The Crystal Structure of Ump Kinase From Bacillus Anthracis (BA1797)

Enzymatic activity of The Crystal Structure of Ump Kinase From Bacillus Anthracis (BA1797)

All present enzymatic activity of The Crystal Structure of Ump Kinase From Bacillus Anthracis (BA1797):
2.7.4.22;

Protein crystallography data

The structure of The Crystal Structure of Ump Kinase From Bacillus Anthracis (BA1797), PDB code: 2jjx was solved by C.Meier, L.G.Carter, E.J.Mancini, R.J.Owens, D.I.Stuart, R.M.Esnouf, Oxfordprotein Production Facility (Oppf), Structural Proteomics In Europe(Spine), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.82
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 87.300, 87.300, 383.900, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 25.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of Ump Kinase From Bacillus Anthracis (BA1797) (pdb code 2jjx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of Ump Kinase From Bacillus Anthracis (BA1797), PDB code: 2jjx:

Magnesium binding site 1 out of 1 in 2jjx

Go back to Magnesium Binding Sites List in 2jjx
Magnesium binding site 1 out of 1 in the The Crystal Structure of Ump Kinase From Bacillus Anthracis (BA1797)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Ump Kinase From Bacillus Anthracis (BA1797) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1247

b:82.3
occ:1.00
O2A C:ATP1246 2.2 0.6 1.0
O A:HOH2048 2.8 0.1 1.0
O2A B:ATP1246 3.0 0.6 1.0
O2A A:ATP1246 3.5 1.0 1.0
PA C:ATP1246 3.7 0.9 1.0
PA B:ATP1246 4.1 0.2 1.0
O5' B:ATP1246 4.2 0.0 1.0
O5' C:ATP1246 4.4 0.5 1.0
NH2 B:ARG117 4.4 0.4 1.0
PA A:ATP1246 4.5 0.3 1.0
O1B A:ATP1246 4.5 0.5 1.0
O1B B:ATP1246 4.5 0.2 1.0
O5' A:ATP1246 4.5 0.0 1.0
O1A C:ATP1246 4.6 1.0 1.0
O1B C:ATP1246 4.6 0.9 1.0
NH1 B:ARG117 4.6 97.5 1.0
NH2 A:ARG117 4.7 0.9 1.0
O2B B:ATP1246 4.7 0.5 1.0
O3A B:ATP1246 4.7 0.2 1.0
O3A C:ATP1246 4.8 0.4 1.0
O3A A:ATP1246 4.8 0.8 1.0
NH2 C:ARG117 4.9 0.0 1.0
O2B C:ATP1246 4.9 0.7 1.0
CZ B:ARG117 4.9 0.1 1.0
PB B:ATP1246 4.9 0.3 1.0
NH1 A:ARG117 5.0 0.2 1.0
C5' B:ATP1246 5.0 0.9 1.0

Reference:

C.Meier, L.G.Carter, S.Sainsbury, E.J.Mancini, R.J.Owens, D.I.Stuart, R.M.Esnouf. The Crystal Structure of Ump Kinase From Bacillus Anthracis (BA1797) Reveals An Allosteric Nucleotide-Binding Site. J.Mol.Biol. V. 381 1098 2008.
ISSN: ISSN 0022-2836
PubMed: 18625239
DOI: 10.1016/J.JMB.2008.06.078
Page generated: Mon Dec 14 07:29:53 2020

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