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Magnesium in PDB 2ksz: The Solution Structure of the Magnesium Bound Soybean Calmodulin Isoform 4 N-Domain

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Solution Structure of the Magnesium Bound Soybean Calmodulin Isoform 4 N-Domain (pdb code 2ksz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Solution Structure of the Magnesium Bound Soybean Calmodulin Isoform 4 N-Domain, PDB code: 2ksz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2ksz

Go back to Magnesium Binding Sites List in 2ksz
Magnesium binding site 1 out of 2 in the The Solution Structure of the Magnesium Bound Soybean Calmodulin Isoform 4 N-Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Solution Structure of the Magnesium Bound Soybean Calmodulin Isoform 4 N-Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg100

b:0.0
occ:1.00
OD1 A:ASP20 2.5 0.0 1.0
OD2 A:ASP22 2.6 0.0 1.0
OD2 A:ASP24 2.6 0.0 1.0
HG22 A:ILE27 2.6 0.0 1.0
HA A:ILE27 2.6 0.0 1.0
OE2 A:GLU31 2.6 0.0 1.0
O A:CYS26 2.6 0.0 1.0
HG21 A:ILE27 2.7 0.0 1.0
OD1 A:ASP24 2.9 0.0 1.0
CG2 A:ILE27 3.1 0.0 1.0
CG A:ASP24 3.1 0.0 1.0
OE1 A:GLU31 3.1 0.0 1.0
CD A:GLU31 3.2 0.0 1.0
CG A:ASP22 3.5 0.0 1.0
CA A:ILE27 3.5 0.0 1.0
CG A:ASP20 3.6 0.0 1.0
OD1 A:ASP22 3.7 0.0 1.0
C A:CYS26 3.7 0.0 1.0
CB A:ILE27 3.8 0.0 1.0
HG23 A:ILE27 4.0 0.0 1.0
N A:ILE27 4.1 0.0 1.0
HB A:ILE27 4.2 0.0 1.0
H A:THR28 4.2 0.0 1.0
OD2 A:ASP20 4.2 0.0 1.0
HA A:ASP20 4.4 0.0 1.0
CB A:ASP24 4.6 0.0 1.0
C A:ILE27 4.7 0.0 1.0
HG22 A:THR28 4.7 0.0 1.0
HB2 A:ASP20 4.7 0.0 1.0
CB A:ASP20 4.7 0.0 1.0
CG A:GLU31 4.8 0.0 1.0
N A:THR28 4.8 0.0 1.0
CB A:ASP22 4.9 0.0 1.0
HB3 A:ASP24 4.9 0.0 1.0
O A:GLY25 4.9 0.0 1.0
HZ A:PHE16 4.9 0.0 1.0

Magnesium binding site 2 out of 2 in 2ksz

Go back to Magnesium Binding Sites List in 2ksz
Magnesium binding site 2 out of 2 in the The Solution Structure of the Magnesium Bound Soybean Calmodulin Isoform 4 N-Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Solution Structure of the Magnesium Bound Soybean Calmodulin Isoform 4 N-Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg101

b:0.0
occ:1.00
OD1 A:ASP56 2.5 0.0 1.0
O A:THR62 2.6 0.0 1.0
OD2 A:ASP58 2.6 0.0 1.0
OE2 A:GLU67 2.6 0.0 1.0
OD1 A:ASN60 2.6 0.0 1.0
HB2 A:ASP58 2.6 0.0 1.0
OE1 A:GLU67 3.0 0.0 1.0
HG1 A:THR62 3.0 0.0 1.0
CD A:GLU67 3.1 0.0 1.0
H A:THR62 3.1 0.0 1.0
HA A:ASP56 3.2 0.0 1.0
HD22 A:ASN60 3.2 0.0 1.0
HG3 A:GLU64 3.3 0.0 1.0
H A:ASP58 3.3 0.0 1.0
CG A:ASP58 3.4 0.0 1.0
CB A:ASP58 3.4 0.0 1.0
CG A:ASN60 3.5 0.0 1.0
CG A:ASP56 3.6 0.0 1.0
OG1 A:THR62 3.7 0.0 1.0
C A:THR62 3.7 0.0 1.0
ND2 A:ASN60 3.7 0.0 1.0
H A:ASN60 3.7 0.0 1.0
H A:GLY59 3.8 0.0 1.0
CD A:GLU64 3.8 0.0 1.0
N A:ASP58 3.9 0.0 1.0
N A:THR62 4.0 0.0 1.0
H A:ALA57 4.0 0.0 1.0
CA A:ASP56 4.0 0.0 1.0
CG A:GLU64 4.0 0.0 1.0
OE1 A:GLU64 4.0 0.0 1.0
OE2 A:GLU64 4.1 0.0 1.0
CA A:ASP58 4.2 0.0 1.0
HB3 A:ASP58 4.2 0.0 1.0
CB A:ASP56 4.2 0.0 1.0
CA A:THR62 4.3 0.0 1.0
N A:ALA57 4.3 0.0 1.0
H A:GLY61 4.3 0.0 1.0
C A:ASP56 4.3 0.0 1.0
HB2 A:ASP56 4.4 0.0 1.0
N A:GLY59 4.4 0.0 1.0
OD2 A:ASP56 4.5 0.0 1.0
HA A:ILE63 4.5 0.0 1.0
OD1 A:ASP58 4.5 0.0 1.0
CB A:THR62 4.6 0.0 1.0
HG2 A:GLU64 4.6 0.0 1.0
N A:ASN60 4.6 0.0 1.0
CG A:GLU67 4.6 0.0 1.0
HD21 A:ASN60 4.7 0.0 1.0
N A:ILE63 4.7 0.0 1.0
C A:ASP58 4.7 0.0 1.0
N A:GLY61 4.8 0.0 1.0
C A:ALA57 4.9 0.0 1.0
CB A:ASN60 4.9 0.0 1.0
HG2 A:GLU67 5.0 0.0 1.0
CA A:ILE63 5.0 0.0 1.0

Reference:

H.Huang, H.Ishida, H.J.Vogel. The Solution Structure of the MG2+ Form of Soybean Calmodulin Isoform 4 Reveals Unique Features of Plant Calmodulins in Resting Cells. Protein Sci. V. 19 475 2010.
ISSN: ISSN 0961-8368
PubMed: 20054830
DOI: 10.1002/PRO.325
Page generated: Mon Dec 14 07:30:00 2020

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