Magnesium in PDB 2m2u: Binary Complex of African Swine Fever Virus Pol X with Mgdgtp

All present enzymatic activity of Binary Complex of African Swine Fever Virus Pol X with Mgdgtp:
2.7.7.7;

The binding sites of Magnesium atom in the Binary Complex of African Swine Fever Virus Pol X with Mgdgtp (pdb code 2m2u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Binary Complex of African Swine Fever Virus Pol X with Mgdgtp, PDB code: 2m2u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Binary Complex of African Swine Fever Virus Pol X with Mgdgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Binary Complex of African Swine Fever Virus Pol X with Mgdgtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:0.5 occ:1.00 OD2 A:ASP51 1.5 0.4 1.0 OD2 A:ASP100 1.6 0.4 1.0 OD1 A:ASP49 1.6 1.0 1.0 CG A:ASP51 2.5 0.3 1.0 HB2 A:ASP100 2.5 0.5 1.0 CG A:ASP100 2.6 0.4 1.0 CG A:ASP49 2.6 0.5 1.0 O1A A:DGT201 2.8 1.3 1.0 OD1 A:ASP51 2.9 0.4 1.0 OD2 A:ASP49 3.0 1.1 1.0 CB A:ASP100 3.0 0.3 1.0 HB3 A:ASP100 3.5 0.6 1.0 O3A A:DGT201 3.6 0.7 1.0 OD1 A:ASP100 3.6 0.7 1.0 MG A:MG203 3.7 0.8 1.0 PA A:DGT201 3.7 0.9 1.0 CB A:ASP51 3.8 0.3 1.0 CB A:ASP49 3.9 0.4 1.0 HB3 A:ASP51 4.0 0.3 1.0 HB2 A:ASP49 4.0 0.5 1.0 H A:ASP100 4.0 0.3 1.0 O3G A:DGT201 4.1 0.9 1.0 HA A:ASP51 4.2 0.3 1.0 O2A A:DGT201 4.3 1.0 1.0 CA A:ASP100 4.3 0.3 1.0 O A:ASP49 4.4 0.4 1.0 N A:ASP100 4.4 0.2 1.0 CA A:ASP51 4.5 0.2 1.0 C A:ASP49 4.6 0.3 1.0 HB2 A:ASP51 4.6 0.3 1.0 O A:VAL50 4.6 0.3 1.0 HB3 A:ASP49 4.6 0.6 1.0 N A:ASP51 4.7 0.2 1.0 HN2 A:DGT201 4.7 1.4 1.0 N2 A:DGT201 4.7 1.0 1.0 C A:VAL50 4.7 0.2 1.0 HE1 A:PHE102 4.8 2.2 1.0 HN2A A:DGT201 4.8 1.4 1.0 CA A:ASP49 4.9 0.4 1.0 HE2 A:PHE116 4.9 2.2 1.0 HA A:ASP100 4.9 0.3 1.0 H A:ASP49 5.0 0.6 1.0

Magnesium binding site 2 out of 2 in the Binary Complex of African Swine Fever Virus Pol X with Mgdgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Binary Complex of African Swine Fever Virus Pol X with Mgdgtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:0.8 occ:1.00 O3G A:DGT201 1.3 0.9 1.0 O A:ASP49 1.6 0.4 1.0 O2B A:DGT201 2.1 0.7 1.0 H A:ASP49 2.4 0.6 1.0 OD1 A:ASP51 2.5 0.4 1.0 C A:ASP49 2.6 0.3 1.0 PG A:DGT201 2.7 0.8 1.0 O3A A:DGT201 2.8 0.7 1.0 OD1 A:ASP49 2.8 1.0 1.0 PB A:DGT201 2.8 0.6 1.0 CG A:ASP49 2.9 0.5 1.0 HD13 A:LEU47 2.9 1.7 1.0 N A:ASP49 3.0 0.5 1.0 O2G A:DGT201 3.1 1.0 1.0 CA A:ASP49 3.2 0.4 1.0 O3B A:DGT201 3.2 0.7 1.0 OD2 A:ASP49 3.3 1.1 1.0 CB A:ASP49 3.6 0.4 1.0 CG A:ASP51 3.6 0.3 1.0 MG A:MG202 3.7 0.5 1.0 N A:VAL50 3.8 0.3 1.0 O1G A:DGT201 3.8 1.1 1.0 HB2 A:ASN48 3.8 1.2 1.0 HA A:VAL50 3.8 0.3 1.0 CD1 A:LEU47 4.0 1.1 1.0 OD2 A:ASP51 4.0 0.4 1.0 HB2 A:LEU47 4.1 1.5 1.0 PA A:DGT201 4.2 0.9 1.0 C A:ASN48 4.2 0.5 1.0 H A:ASN48 4.2 0.7 1.0 HA A:ASP49 4.2 0.4 1.0 HD11 A:LEU47 4.2 1.7 1.0 HB2 A:ASP49 4.2 0.5 1.0 CA A:VAL50 4.2 0.3 1.0 O1B A:DGT201 4.3 0.8 1.0 H A:ASP51 4.3 0.2 1.0 HB3 A:ASP49 4.4 0.6 1.0 HD12 A:LEU47 4.5 1.6 1.0 O2A A:DGT201 4.5 1.0 1.0 O1A A:DGT201 4.5 1.3 1.0 HD22 A:LEU47 4.5 1.6 1.0 H A:VAL50 4.5 0.3 1.0 C A:VAL50 4.5 0.2 1.0 N A:ASP51 4.6 0.2 1.0 N A:ASN48 4.6 0.6 1.0 HA3 A:GLY38 4.6 0.3 1.0 CB A:ASN48 4.7 0.8 1.0 CA A:ASN48 4.7 0.6 1.0 H A:SER39 4.8 0.4 1.0 CB A:ASP51 4.9 0.3 1.0 CG A:LEU47 4.9 0.4 1.0

W.J.Wu, M.I.Su, J.L.Wu, S.Kumar, L.H.Lim, C.W.Wang, F.H.Nelissen, M.C.Chen, J.F.Doreleijers, S.S.Wijmenga, M.D.Tsai. How A Low-Fidelity Dna Polymerase Chooses Non-Watson-Crick From Watson-Crick Incorporation. J.Am.Chem.Soc. 2014.
ISSN: ESSN 1520-5126
PubMed: 24617852
DOI: 10.1021/JA4102375