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Magnesium in PDB 2m2u: Binary Complex of African Swine Fever Virus Pol X with Mgdgtp

Enzymatic activity of Binary Complex of African Swine Fever Virus Pol X with Mgdgtp

All present enzymatic activity of Binary Complex of African Swine Fever Virus Pol X with Mgdgtp:
2.7.7.7;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Binary Complex of African Swine Fever Virus Pol X with Mgdgtp (pdb code 2m2u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Binary Complex of African Swine Fever Virus Pol X with Mgdgtp, PDB code: 2m2u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2m2u

Go back to Magnesium Binding Sites List in 2m2u
Magnesium binding site 1 out of 2 in the Binary Complex of African Swine Fever Virus Pol X with Mgdgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Binary Complex of African Swine Fever Virus Pol X with Mgdgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:0.5
occ:1.00
OD2 A:ASP51 1.5 0.4 1.0
OD2 A:ASP100 1.6 0.4 1.0
OD1 A:ASP49 1.6 1.0 1.0
CG A:ASP51 2.5 0.3 1.0
HB2 A:ASP100 2.5 0.5 1.0
CG A:ASP100 2.6 0.4 1.0
CG A:ASP49 2.6 0.5 1.0
O1A A:DGT201 2.8 1.3 1.0
OD1 A:ASP51 2.9 0.4 1.0
OD2 A:ASP49 3.0 1.1 1.0
CB A:ASP100 3.0 0.3 1.0
HB3 A:ASP100 3.5 0.6 1.0
O3A A:DGT201 3.6 0.7 1.0
OD1 A:ASP100 3.6 0.7 1.0
MG A:MG203 3.7 0.8 1.0
PA A:DGT201 3.7 0.9 1.0
CB A:ASP51 3.8 0.3 1.0
CB A:ASP49 3.9 0.4 1.0
HB3 A:ASP51 4.0 0.3 1.0
HB2 A:ASP49 4.0 0.5 1.0
H A:ASP100 4.0 0.3 1.0
O3G A:DGT201 4.1 0.9 1.0
HA A:ASP51 4.2 0.3 1.0
O2A A:DGT201 4.3 1.0 1.0
CA A:ASP100 4.3 0.3 1.0
O A:ASP49 4.4 0.4 1.0
N A:ASP100 4.4 0.2 1.0
CA A:ASP51 4.5 0.2 1.0
C A:ASP49 4.6 0.3 1.0
HB2 A:ASP51 4.6 0.3 1.0
O A:VAL50 4.6 0.3 1.0
HB3 A:ASP49 4.6 0.6 1.0
N A:ASP51 4.7 0.2 1.0
HN2 A:DGT201 4.7 1.4 1.0
N2 A:DGT201 4.7 1.0 1.0
C A:VAL50 4.7 0.2 1.0
HE1 A:PHE102 4.8 2.2 1.0
HN2A A:DGT201 4.8 1.4 1.0
CA A:ASP49 4.9 0.4 1.0
HE2 A:PHE116 4.9 2.2 1.0
HA A:ASP100 4.9 0.3 1.0
H A:ASP49 5.0 0.6 1.0

Magnesium binding site 2 out of 2 in 2m2u

Go back to Magnesium Binding Sites List in 2m2u
Magnesium binding site 2 out of 2 in the Binary Complex of African Swine Fever Virus Pol X with Mgdgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Binary Complex of African Swine Fever Virus Pol X with Mgdgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg203

b:0.8
occ:1.00
O3G A:DGT201 1.3 0.9 1.0
O A:ASP49 1.6 0.4 1.0
O2B A:DGT201 2.1 0.7 1.0
H A:ASP49 2.4 0.6 1.0
OD1 A:ASP51 2.5 0.4 1.0
C A:ASP49 2.6 0.3 1.0
PG A:DGT201 2.7 0.8 1.0
O3A A:DGT201 2.8 0.7 1.0
OD1 A:ASP49 2.8 1.0 1.0
PB A:DGT201 2.8 0.6 1.0
CG A:ASP49 2.9 0.5 1.0
HD13 A:LEU47 2.9 1.7 1.0
N A:ASP49 3.0 0.5 1.0
O2G A:DGT201 3.1 1.0 1.0
CA A:ASP49 3.2 0.4 1.0
O3B A:DGT201 3.2 0.7 1.0
OD2 A:ASP49 3.3 1.1 1.0
CB A:ASP49 3.6 0.4 1.0
CG A:ASP51 3.6 0.3 1.0
MG A:MG202 3.7 0.5 1.0
N A:VAL50 3.8 0.3 1.0
O1G A:DGT201 3.8 1.1 1.0
HB2 A:ASN48 3.8 1.2 1.0
HA A:VAL50 3.8 0.3 1.0
CD1 A:LEU47 4.0 1.1 1.0
OD2 A:ASP51 4.0 0.4 1.0
HB2 A:LEU47 4.1 1.5 1.0
PA A:DGT201 4.2 0.9 1.0
C A:ASN48 4.2 0.5 1.0
H A:ASN48 4.2 0.7 1.0
HA A:ASP49 4.2 0.4 1.0
HD11 A:LEU47 4.2 1.7 1.0
HB2 A:ASP49 4.2 0.5 1.0
CA A:VAL50 4.2 0.3 1.0
O1B A:DGT201 4.3 0.8 1.0
H A:ASP51 4.3 0.2 1.0
HB3 A:ASP49 4.4 0.6 1.0
HD12 A:LEU47 4.5 1.6 1.0
O2A A:DGT201 4.5 1.0 1.0
O1A A:DGT201 4.5 1.3 1.0
HD22 A:LEU47 4.5 1.6 1.0
H A:VAL50 4.5 0.3 1.0
C A:VAL50 4.5 0.2 1.0
N A:ASP51 4.6 0.2 1.0
N A:ASN48 4.6 0.6 1.0
HA3 A:GLY38 4.6 0.3 1.0
CB A:ASN48 4.7 0.8 1.0
CA A:ASN48 4.7 0.6 1.0
H A:SER39 4.8 0.4 1.0
CB A:ASP51 4.9 0.3 1.0
CG A:LEU47 4.9 0.4 1.0

Reference:

W.J.Wu, M.I.Su, J.L.Wu, S.Kumar, L.H.Lim, C.W.Wang, F.H.Nelissen, M.C.Chen, J.F.Doreleijers, S.S.Wijmenga, M.D.Tsai. How A Low-Fidelity Dna Polymerase Chooses Non-Watson-Crick From Watson-Crick Incorporation. J.Am.Chem.Soc. 2014.
ISSN: ESSN 1520-5126
PubMed: 24617852
DOI: 10.1021/JA4102375
Page generated: Mon Dec 14 07:30:31 2020

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