Magnesium in PDB 2m2w: Ternary Complex of Asfv Pol X with Dna and Mgdgtp

All present enzymatic activity of Ternary Complex of Asfv Pol X with Dna and Mgdgtp:
2.7.7.7;

The binding sites of Magnesium atom in the Ternary Complex of Asfv Pol X with Dna and Mgdgtp (pdb code 2m2w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ternary Complex of Asfv Pol X with Dna and Mgdgtp, PDB code: 2m2w:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ternary Complex of Asfv Pol X with Dna and Mgdgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ternary Complex of Asfv Pol X with Dna and Mgdgtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:2.0 occ:1.00 OD1 A:ASP100 1.5 2.6 1.0 OD2 A:ASP49 1.7 1.9 1.0 OD1 A:ASP51 1.7 1.6 1.0 CG A:ASP100 2.1 1.8 1.0 OD2 A:ASP100 2.2 2.0 1.0 O1A A:DGT201 2.3 2.0 1.0 CG A:ASP49 2.6 1.6 1.0 H A:ASP100 2.7 1.1 1.0 CG A:ASP51 2.8 1.1 1.0 OD1 A:ASP49 2.9 1.8 1.0 OD2 A:ASP51 3.2 1.6 1.0 PA A:DGT201 3.3 2.1 1.0 CB A:ASP100 3.5 1.4 1.0 MG A:MG203 3.5 2.3 1.0 N A:ASP100 3.5 1.1 1.0 O2A A:DGT201 3.7 2.8 1.0 O5' A:DGT201 3.8 1.8 1.0 CB A:ASP49 3.9 1.7 1.0 O A:ASP100 4.0 1.1 1.0 HD12 A:LEU99 4.0 2.1 1.0 CA A:ASP100 4.0 1.2 1.0 HA A:LEU99 4.0 1.3 1.0 HB3 A:ASP100 4.0 1.6 1.0 HB2 A:ASP49 4.0 2.0 1.0 CB A:ASP51 4.1 0.9 1.0 HB2 A:ASP100 4.2 1.7 1.0 HB3 A:ASP51 4.2 1.0 1.0 C A:ASP100 4.4 1.0 1.0 HB3 A:ASP49 4.4 2.0 1.0 O A:GLN98 4.5 1.3 1.0 C A:LEU99 4.6 1.2 1.0 HA A:ASP51 4.6 0.9 1.0 H3'2 B:DOC23 4.7 2.4 1.0 O3G A:DGT201 4.7 3.0 1.0 O3A A:DGT201 4.8 2.7 1.0 CA A:LEU99 4.8 1.2 1.0 CA A:ASP51 4.8 0.9 1.0 HB2 A:ASP51 4.8 1.0 1.0 C5' A:DGT201 4.9 1.7 1.0 O2B A:DGT201 4.9 2.9 1.0 N A:ASP51 4.9 1.0 1.0 HA A:ASP100 5.0 1.2 1.0

Magnesium binding site 2 out of 2 in the Ternary Complex of Asfv Pol X with Dna and Mgdgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ternary Complex of Asfv Pol X with Dna and Mgdgtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:2.3 occ:1.00 O3G A:DGT201 1.3 3.0 1.0 OD2 A:ASP51 1.7 1.6 1.0 OD1 A:ASP49 1.7 1.8 1.0 O1A A:DGT201 2.1 2.0 1.0 O2B A:DGT201 2.4 2.9 1.0 CG A:ASP51 2.8 1.1 1.0 CG A:ASP49 2.9 1.6 1.0 PG A:DGT201 2.9 3.9 1.0 HA2 A:GLY38 3.1 1.1 1.0 PA A:DGT201 3.2 2.1 1.0 PB A:DGT201 3.3 3.1 1.0 OD1 A:ASP51 3.3 1.6 1.0 O A:ASP49 3.3 1.4 1.0 O3A A:DGT201 3.4 2.7 1.0 O3B A:DGT201 3.5 3.8 1.0 OD2 A:ASP49 3.5 1.9 1.0 MG A:MG202 3.5 2.0 1.0 HH21 A:ARG42 3.6 4.2 1.0 O1G A:DGT201 3.8 4.3 1.0 O2G A:DGT201 3.8 4.9 1.0 O5' A:DGT201 3.8 1.8 1.0 C A:ASP49 4.0 1.4 1.0 HG12 A:VAL37 4.0 1.8 1.0 CA A:GLY38 4.0 1.0 1.0 H A:ASP51 4.0 1.0 1.0 CB A:ASP49 4.0 1.7 1.0 HA3 A:GLY38 4.0 1.1 1.0 CB A:ASP51 4.1 0.9 1.0 HB2 A:ASP51 4.1 1.0 1.0 HB3 A:ASP49 4.1 2.0 1.0 HD22 A:ASN48 4.3 3.0 1.0 N A:ASP51 4.3 1.0 1.0 HA A:VAL50 4.4 1.2 1.0 NH2 A:ARG42 4.4 3.8 1.0 O2A A:DGT201 4.5 2.8 1.0 HH22 A:ARG42 4.6 4.2 1.0 CA A:ASP49 4.6 1.6 1.0 O A:VAL37 4.6 0.9 1.0 H A:SER39 4.6 1.4 1.0 O1B A:DGT201 4.7 3.8 1.0 OD2 A:ASP100 4.7 2.0 1.0 N A:VAL50 4.7 1.4 1.0 N A:GLY38 4.8 0.9 1.0 HD21 A:ASN48 4.8 2.4 1.0 HB3 A:ASP51 4.8 1.0 1.0 H A:ASP49 4.8 1.7 1.0 C A:VAL50 4.8 1.1 1.0 CA A:ASP51 4.8 0.9 1.0 ND2 A:ASN48 4.8 2.5 1.0 CA A:VAL50 4.9 1.2 1.0 HB2 A:ASP49 4.9 2.0 1.0 C A:VAL37 4.9 0.8 1.0 OD1 A:ASP100 5.0 2.6 1.0

W.J.Wu, M.I.Su, J.L.Wu, S.Kumar, L.H.Lim, C.W.Wang, F.H.Nelissen, M.C.Chen, J.F.Doreleijers, S.S.Wijmenga, M.D.Tsai. How A Low-Fidelity Dna Polymerase Chooses Non-Watson-Crick From Watson-Crick Incorporation. J.Am.Chem.Soc. 2014.
ISSN: ESSN 1520-5126
PubMed: 24617852
DOI: 10.1021/JA4102375