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Magnesium in PDB 2msd: uc(Nmr) Data-Driven Model of Gtpase Kras-Gnp Tethered to A Lipid-Bilayer Nanodisc

Magnesium Binding Sites:

The binding sites of Magnesium atom in the uc(Nmr) Data-Driven Model of Gtpase Kras-Gnp Tethered to A Lipid-Bilayer Nanodisc (pdb code 2msd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the uc(Nmr) Data-Driven Model of Gtpase Kras-Gnp Tethered to A Lipid-Bilayer Nanodisc, PDB code: 2msd:

Magnesium binding site 1 out of 1 in 2msd

Go back to Magnesium Binding Sites List in 2msd
Magnesium binding site 1 out of 1 in the uc(Nmr) Data-Driven Model of Gtpase Kras-Gnp Tethered to A Lipid-Bilayer Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of uc(Nmr) Data-Driven Model of Gtpase Kras-Gnp Tethered to A Lipid-Bilayer Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:10.0
occ:1.00
OD2 B:ASP57 1.5 10.0 1.0
OD2 B:ASP38 1.6 10.0 1.0
OG1 B:THR35 1.7 10.0 1.0
OD1 B:ASP38 1.7 10.0 1.0
CG B:ASP38 1.9 10.0 1.0
CG B:ASP57 2.7 10.0 1.0
CB B:THR35 2.8 10.0 1.0
CG2 B:THR35 3.0 10.0 1.0
CB B:ASP57 3.4 10.0 1.0
O B:ASP57 3.4 10.0 1.0
CB B:ASP38 3.4 10.0 1.0
OG B:SER17 3.7 10.0 1.0
OD1 B:ASP57 3.7 10.0 1.0
CA B:THR35 3.9 10.0 1.0
C B:ASP57 4.2 10.0 1.0
CB B:SER17 4.3 10.0 1.0
O B:ASP38 4.3 10.0 1.0
CA B:ASP38 4.4 10.0 1.0
CA B:ASP57 4.4 10.0 1.0
N B:ASP38 4.5 10.0 1.0
C B:THR35 4.6 10.0 1.0
N B:ILE36 4.7 10.0 1.0
C B:ASP38 4.8 10.0 1.0

Reference:

M.T.Mazhab-Jafari, C.B.Marshall, M.J.Smith, G.M.Gasmi-Seabrook, P.B.Stathopulos, F.Inagaki, L.E.Kay, B.G.Neel, M.Ikura. Oncogenic and Rasopathy-Associated K-Ras Mutations Relieve Membrane-Dependent Occlusion of the Effector-Binding Site. Proc.Natl.Acad.Sci.Usa V. 112 6625 2015.
ISSN: ISSN 0027-8424
PubMed: 25941399
DOI: 10.1073/PNAS.1419895112
Page generated: Mon Dec 14 07:30:43 2020

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