Magnesium in PDB 2nux: 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus Acidocaldarius, Native Structure in P6522 at 2.5 A Resolution

Enzymatic activity of 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus Acidocaldarius, Native Structure in P6522 at 2.5 A Resolution

All present enzymatic activity of 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus Acidocaldarius, Native Structure in P6522 at 2.5 A Resolution:
4.1.2.14;

Protein crystallography data

The structure of 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus Acidocaldarius, Native Structure in P6522 at 2.5 A Resolution, PDB code: 2nux was solved by A.Van Eerde, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	36.00 / 2.50
*Space group*	P 6₅ 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	109.509, 109.509, 319.559, 90.00, 90.00, 120.00
*R / R_free (%)*	17.5 / 21.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus Acidocaldarius, Native Structure in P6522 at 2.5 A Resolution (pdb code 2nux). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus Acidocaldarius, Native Structure in P6522 at 2.5 A Resolution, PDB code: 2nux:

Magnesium binding site 1 out of 1 in 2nux

Go back to

Magnesium Binding Sites List in 2nux

Magnesium binding site 1 out of 1 in the 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus Acidocaldarius, Native Structure in P6522 at 2.5 A Resolution

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus Acidocaldarius, Native Structure in P6522 at 2.5 A Resolution within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg1001 b:43.2 occ:1.00	O	A:HOH1002	2.1	33.3	1.0
	O	A:HOH1003	2.1	51.9	1.0
	OD1	A:ASP63	2.2	27.6	1.0
	CG	A:ASP63	3.2	30.7	1.0
	OD2	A:ASP63	3.5	27.6	1.0
	O	A:HOH1044	3.8	42.9	1.0
	O	A:ASN59	4.3	24.5	1.0
	CB	A:ASP63	4.6	20.2	1.0
	CA	A:ASP63	4.9	23.1	1.0
	N	A:ASP63	5.0	22.4	1.0

Reference:

S.Wolterink-Van Loo, A.Van Eerde, M.A.J.Siemerink, J.Akerboom, B.W.Dijkstra, J.Van Der Oost. Biochemical and Structural Exploration of the Catalytic Capacity of Sulfolobus Kdg Aldolases Biochem.J. V. 403 421 2007.
ISSN: ISSN 0264-6021
PubMed: 17176250
DOI: 10.1042/BJ20061419

Page generated: Wed Aug 14 00:56:15 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy