Atomistry » Magnesium » PDB 2mse-2o4g » 2nzj
Atomistry »
  Magnesium »
    PDB 2mse-2o4g »
      2nzj »

Magnesium in PDB 2nzj: The Crystal Structure of REM1 in Complex with Gdp

Protein crystallography data

The structure of The Crystal Structure of REM1 in Complex with Gdp, PDB code: 2nzj was solved by A.P.Turnbull, E.Papagrigoriou, E.Ugochukwu, J.M.Elkins, M.Soundararajan, X.Yang, F.Gorrec, C.Umeano, E.Salah, N.Burgess, C.Johansson, G.Berridge, O.Gileadi, J.Bray, B.Marsden, S.Watts, F.Von Delft, J.Weigelt, A.Edwards, C.H.Arrowsmith, M.Sundstrom, D.Doyle, Structural Genomics Consortium(Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.00 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.640, 102.284, 165.565, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 28

Other elements in 2nzj:

The structure of The Crystal Structure of REM1 in Complex with Gdp also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of REM1 in Complex with Gdp (pdb code 2nzj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the The Crystal Structure of REM1 in Complex with Gdp, PDB code: 2nzj:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 2nzj

Go back to Magnesium Binding Sites List in 2nzj
Magnesium binding site 1 out of 4 in the The Crystal Structure of REM1 in Complex with Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of REM1 in Complex with Gdp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg252

b:37.1
occ:1.00
O A:HOH3 1.8 31.9 1.0
O A:HOH4 1.9 27.6 1.0
O A:HOH2 2.0 31.9 1.0
O A:HOH1 2.0 25.6 1.0
O2B A:GDP1001 2.1 29.9 1.0
OG1 A:THR94 2.2 16.4 1.0
CB A:THR94 3.1 18.4 1.0
PB A:GDP1001 3.2 32.5 1.0
O3B A:GDP1001 3.2 35.4 1.0
O1A A:GDP1001 3.7 35.3 1.0
N A:THR94 3.9 18.6 1.0
CA A:THR94 4.1 18.4 1.0
OD2 A:ASP134 4.1 15.7 1.0
CG2 A:THR94 4.2 17.7 1.0
O3A A:GDP1001 4.3 34.0 1.0
O1B A:GDP1001 4.3 32.1 1.0
PA A:GDP1001 4.4 35.2 1.0
OD1 A:ASP134 4.4 14.3 1.0
O2A A:GDP1001 4.6 34.5 1.0
CG A:ASP134 4.7 13.9 1.0

Magnesium binding site 2 out of 4 in 2nzj

Go back to Magnesium Binding Sites List in 2nzj
Magnesium binding site 2 out of 4 in the The Crystal Structure of REM1 in Complex with Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of REM1 in Complex with Gdp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg252

b:36.5
occ:1.00
O B:HOH8 2.0 41.2 1.0
O B:HOH6 2.0 34.5 1.0
O B:HOH7 2.0 32.4 1.0
O2B B:GDP1002 2.1 34.7 1.0
O B:HOH5 2.2 36.3 1.0
OG1 B:THR94 2.4 17.4 1.0
PB B:GDP1002 3.1 36.5 1.0
O3B B:GDP1002 3.1 38.2 1.0
CB B:THR94 3.4 18.9 1.0
O1A B:GDP1002 3.8 37.1 1.0
N B:THR94 4.1 18.7 1.0
O1B B:GDP1002 4.1 35.7 1.0
O3A B:GDP1002 4.2 34.6 1.0
CA B:THR94 4.3 18.5 1.0
PA B:GDP1002 4.3 38.9 1.0
OD2 B:ASP134 4.3 14.8 1.0
CG2 B:THR94 4.5 17.4 1.0
OD1 B:ASP134 4.5 15.3 1.0
O2A B:GDP1002 4.6 35.7 1.0
CG B:ASP134 4.9 13.8 1.0
CB B:LYS93 5.0 18.9 1.0

Magnesium binding site 3 out of 4 in 2nzj

Go back to Magnesium Binding Sites List in 2nzj
Magnesium binding site 3 out of 4 in the The Crystal Structure of REM1 in Complex with Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Crystal Structure of REM1 in Complex with Gdp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg252

b:49.2
occ:1.00
OG1 C:THR94 1.8 18.0 1.0
O C:HOH10 2.0 29.3 1.0
O C:HOH9 2.0 34.2 1.0
O C:HOH12 2.0 44.8 1.0
O C:HOH11 2.1 35.1 1.0
O2B C:GDP1003 2.2 40.8 1.0
CB C:THR94 2.9 18.6 1.0
PB C:GDP1003 3.5 41.0 1.0
N C:THR94 3.7 18.6 1.0
OD2 C:ASP134 3.7 16.3 1.0
CA C:THR94 3.8 18.5 1.0
O3B C:GDP1003 3.8 40.9 1.0
OD1 C:ASP134 4.0 15.2 1.0
CG2 C:THR94 4.1 16.8 1.0
O1A C:GDP1003 4.1 40.8 1.0
CG C:ASP134 4.3 14.7 1.0
O1B C:GDP1003 4.4 39.9 1.0
O3A C:GDP1003 4.5 40.7 1.0
PA C:GDP1003 4.7 42.5 1.0
CB C:LYS93 4.7 18.6 1.0
C C:LYS93 4.8 18.9 1.0
O2A C:GDP1003 4.8 41.5 1.0
NZ C:LYS93 4.9 18.2 1.0
CE C:LYS93 5.0 18.3 1.0

Magnesium binding site 4 out of 4 in 2nzj

Go back to Magnesium Binding Sites List in 2nzj
Magnesium binding site 4 out of 4 in the The Crystal Structure of REM1 in Complex with Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Crystal Structure of REM1 in Complex with Gdp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg252

b:50.9
occ:1.00
O D:HOH15 1.8 37.0 1.0
O D:HOH13 1.8 33.8 1.0
O D:HOH14 1.8 39.4 1.0
O2B D:GDP1004 2.0 43.8 1.0
O D:HOH16 2.0 48.3 1.0
OG1 D:THR94 2.2 17.6 1.0
PB D:GDP1004 3.2 45.0 1.0
CB D:THR94 3.3 18.6 1.0
O3B D:GDP1004 3.3 45.1 1.0
OD2 D:ASP134 3.7 16.1 1.0
N D:THR94 3.9 18.7 1.0
OD1 D:ASP134 4.1 13.9 1.0
O1A D:GDP1004 4.1 38.7 1.0
CA D:THR94 4.1 18.4 1.0
O1B D:GDP1004 4.2 46.3 1.0
O3A D:GDP1004 4.3 42.6 1.0
CG D:ASP134 4.4 14.2 1.0
CG2 D:THR94 4.4 17.9 1.0
NZ D:LYS93 4.4 18.6 1.0
PA D:GDP1004 4.6 42.5 1.0
CB D:LYS93 4.7 19.3 1.0
O2A D:GDP1004 4.8 43.1 1.0
CE D:LYS93 4.9 18.6 1.0
C D:LYS93 4.9 18.9 1.0

Reference:

A.P.Turnbull, E.Papagrigoriou, E.Ugochukwu, J.M.Elkins, M.Soundararajan, X.Yang, F.Gorrec, C.Umeano, E.Salah, N.Burgess, C.Johansson, G.Berridge, O.Gileadi, J.Bray, B.Marsden, S.Watts, F.Von Delft, J.Weigelt, A.Edwards, C.H.Arrowsmith, M.Sundstrom, D.Doyle. The Crystal Structure of REM1 in Complex with Gdp To Be Published.
Page generated: Mon Dec 14 07:31:20 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy