Magnesium in PDB 2o01: The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution

The structure of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution, PDB code: 2o01 was solved by A.Amunts, O.Drory, N.Nelson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 3.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	120.054, 188.784, 127.518, 90.00, 95.19, 90.00
R / Rfree (%)	34.8 / 40.9

The structure of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 168;

Binding sites:

The binding sites of Magnesium atom in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution (pdb code 2o01). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 168 binding sites of Magnesium where determined in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution, PDB code: 2o01:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 168 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:63.7 occ:1.00 MG A:CLA1101 0.0 63.7 1.0 NA A:CLA1101 2.0 63.3 1.0 NC A:CLA1101 2.0 63.6 1.0 ND A:CLA1101 2.1 64.0 1.0 NB A:CLA1101 2.1 63.2 1.0 NE2 A:HIS58 2.8 45.5 1.0 C1A A:CLA1101 2.9 63.2 1.0 C4A A:CLA1101 3.0 62.3 1.0 C1C A:CLA1101 3.1 63.4 1.0 C1B A:CLA1101 3.1 62.2 1.0 C4D A:CLA1101 3.1 63.8 1.0 C4C A:CLA1101 3.1 64.5 1.0 C4B A:CLA1101 3.1 62.8 1.0 C1D A:CLA1101 3.1 64.0 1.0 CE1 A:HIS58 3.2 46.7 1.0 CHB A:CLA1101 3.4 61.7 1.0 CHA A:CLA1101 3.5 63.0 1.0 CHC A:CLA1101 3.6 63.1 1.0 CHD A:CLA1101 3.6 64.0 1.0 CD2 A:HIS58 4.0 46.6 1.0 CB J:PRO12 4.1 61.3 1.0 C2C A:CLA1101 4.2 64.0 1.0 C3C A:CLA1101 4.2 64.4 1.0 C2A A:CLA1101 4.3 63.5 1.0 C2D A:CLA1101 4.3 63.7 1.0 C3A A:CLA1101 4.3 63.4 1.0 C3B A:CLA1101 4.3 61.4 1.0 C2B A:CLA1101 4.3 61.6 1.0 C3D A:CLA1101 4.3 63.6 1.0 ND1 A:HIS58 4.4 48.6 1.0 CG A:HIS58 4.9 45.9 1.0 O J:PRO12 4.9 61.7 1.0

Magnesium binding site 2 out of 168 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1102 b:74.2 occ:1.00 MG A:CLA1102 0.0 74.2 1.0 NA A:CLA1102 2.0 75.0 1.0 NB A:CLA1102 2.1 74.2 1.0 ND A:CLA1102 2.1 74.2 1.0 NC A:CLA1102 2.1 73.9 1.0 C1A A:CLA1102 2.9 74.8 1.0 C4A A:CLA1102 3.0 75.9 1.0 NE2 A:HIS62 3.0 43.0 1.0 C4D A:CLA1102 3.1 74.1 1.0 C1B A:CLA1102 3.1 74.3 1.0 C1C A:CLA1102 3.1 73.3 1.0 C4C A:CLA1102 3.1 73.8 1.0 C4B A:CLA1102 3.1 73.9 1.0 C1D A:CLA1102 3.1 73.6 1.0 CE1 A:HIS62 3.3 42.8 1.0 CHB A:CLA1102 3.4 75.4 1.0 CHA A:CLA1102 3.5 74.2 1.0 CHC A:CLA1102 3.6 73.8 1.0 CHD A:CLA1102 3.6 73.9 1.0 CD2 A:HIS62 4.1 44.1 1.0 C2C A:CLA1102 4.3 72.6 1.0 C3C A:CLA1102 4.3 72.7 1.0 C2D A:CLA1102 4.3 73.2 1.0 C3B A:CLA1102 4.3 73.2 1.0 C3D A:CLA1102 4.3 73.8 1.0 C2A A:CLA1102 4.3 75.1 1.0 C2B A:CLA1102 4.3 73.7 1.0 C3A A:CLA1102 4.3 76.0 1.0 ND1 A:HIS62 4.3 43.5 1.0 CG A:HIS62 4.7 45.2 1.0

Magnesium binding site 3 out of 168 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1103 b:78.0 occ:1.00 MG A:CLA1103 0.0 78.0 1.0 NA A:CLA1103 2.0 78.0 1.0 ND A:CLA1103 2.0 78.1 1.0 NC A:CLA1103 2.1 78.5 1.0 NB A:CLA1103 2.1 78.0 1.0 NE2 A:HIS82 2.3 41.6 1.0 CD2 A:HIS82 2.8 42.1 1.0 CMB A:CLA1128 2.9 38.8 1.0 C4D A:CLA1103 2.9 77.7 1.0 C1A A:CLA1103 3.0 77.5 1.0 C4A A:CLA1103 3.0 77.9 1.0 C1C A:CLA1103 3.0 78.1 1.0 C1B A:CLA1103 3.1 77.9 1.0 C4B A:CLA1103 3.1 77.7 1.0 C4C A:CLA1103 3.1 78.2 1.0 C1D A:CLA1103 3.2 77.7 1.0 CE1 A:HIS82 3.4 42.9 1.0 CHB A:CLA1103 3.4 77.3 1.0 CHA A:CLA1103 3.4 77.4 1.0 CHC A:CLA1103 3.6 77.7 1.0 CHD A:CLA1103 3.7 77.7 1.0 CG A:HIS82 4.0 41.4 1.0 C3D A:CLA1103 4.2 76.9 1.0 CG1 A:VAL78 4.2 44.7 1.0 CBB A:CLA1128 4.2 40.8 1.0 C2B A:CLA1128 4.2 39.3 1.0 C2C A:CLA1103 4.2 77.8 1.0 ND1 A:HIS82 4.2 42.6 1.0 C3C A:CLA1103 4.3 77.8 1.0 C2B A:CLA1103 4.3 78.3 1.0 C2A A:CLA1103 4.3 77.1 1.0 C3B A:CLA1103 4.3 77.7 1.0 C3A A:CLA1103 4.3 78.2 1.0 C2D A:CLA1103 4.3 76.8 1.0 CAB A:CLA1128 4.5 40.2 1.0 CBD A:CLA1103 4.8 76.9 1.0 O A:VAL78 5.0 43.7 1.0 C3B A:CLA1128 5.0 38.8 1.0

Magnesium binding site 4 out of 168 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1104 b:43.6 occ:1.00 MG A:CLA1104 0.0 43.6 1.0 NA A:CLA1104 2.0 43.4 1.0 NB A:CLA1104 2.0 43.9 1.0 ND A:CLA1104 2.1 43.2 1.0 NC A:CLA1104 2.1 42.9 1.0 OE1 A:GLN85 2.3 36.1 1.0 C1A A:CLA1104 2.9 43.7 1.0 C4A A:CLA1104 3.0 42.7 1.0 C4D A:CLA1104 3.0 43.4 1.0 C1B A:CLA1104 3.1 44.0 1.0 C4B A:CLA1104 3.1 43.6 1.0 CD A:GLN85 3.1 37.2 1.0 C1C A:CLA1104 3.1 42.1 1.0 C4C A:CLA1104 3.1 41.4 1.0 C1D A:CLA1104 3.1 42.2 1.0 CHB A:CLA1104 3.4 43.8 1.0 CHA A:CLA1104 3.5 43.0 1.0 NE2 A:GLN85 3.5 36.4 1.0 CHC A:CLA1104 3.6 42.7 1.0 CHD A:CLA1104 3.6 41.4 1.0 C3B A:CLA1104 4.2 44.3 1.0 C2D A:CLA1104 4.3 42.2 1.0 C3D A:CLA1104 4.3 42.6 1.0 CG A:GLN85 4.3 37.3 1.0 C2B A:CLA1104 4.3 43.9 1.0 C2C A:CLA1104 4.3 41.1 1.0 C3C A:CLA1104 4.3 40.6 1.0 C2A A:CLA1104 4.3 43.0 1.0 C3A A:CLA1104 4.4 41.1 1.0 CMA A:CLA1103 4.8 78.8 1.0

Magnesium binding site 5 out of 168 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1105 b:83.6 occ:1.00 MG A:CLA1105 0.0 83.6 1.0 NA A:CLA1105 2.0 83.4 1.0 ND A:CLA1105 2.0 83.7 1.0 NB A:CLA1105 2.0 83.8 1.0 NC A:CLA1105 2.1 83.6 1.0 NE2 A:HIS99 2.5 32.2 1.0 C1A A:CLA1105 2.9 83.7 1.0 C4A A:CLA1105 3.0 83.5 1.0 C4D A:CLA1105 3.0 84.1 1.0 C1B A:CLA1105 3.0 83.9 1.0 C1C A:CLA1105 3.1 83.4 1.0 C4B A:CLA1105 3.1 83.4 1.0 C4C A:CLA1105 3.1 83.8 1.0 C1D A:CLA1105 3.1 84.0 1.0 CD2 A:HIS99 3.3 32.6 1.0 CHB A:CLA1105 3.4 84.1 1.0 CHA A:CLA1105 3.4 84.2 1.0 CE1 A:HIS99 3.5 31.2 1.0 CHC A:CLA1105 3.6 83.1 1.0 CHD A:CLA1105 3.6 83.5 1.0 C2D A:CLA1105 4.2 84.4 1.0 C3B A:CLA1105 4.3 83.5 1.0 C3D A:CLA1105 4.3 83.8 1.0 C2A A:CLA1105 4.3 83.9 1.0 C2C A:CLA1105 4.3 83.4 1.0 C3C A:CLA1105 4.3 83.7 1.0 C2B A:CLA1105 4.3 83.3 1.0 C3A A:CLA1105 4.3 83.5 1.0 CG A:HIS99 4.5 35.5 1.0 ND1 A:HIS99 4.6 32.9 1.0

Magnesium binding site 6 out of 168 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1106 b:21.1 occ:1.00 MG A:CLA1106 0.0 21.1 1.0 NA A:CLA1106 2.0 20.8 1.0 ND A:CLA1106 2.0 21.9 1.0 NB A:CLA1106 2.0 19.7 1.0 NC A:CLA1106 2.1 20.2 1.0 C4D A:CLA1106 2.9 23.0 1.0 C4A A:CLA1106 3.0 21.9 1.0 C1A A:CLA1106 3.0 18.9 1.0 C4B A:CLA1106 3.0 20.2 1.0 C1C A:CLA1106 3.1 20.8 1.0 C1B A:CLA1106 3.1 20.0 1.0 C4C A:CLA1106 3.1 20.1 1.0 C1D A:CLA1106 3.1 20.7 1.0 CHB A:CLA1106 3.4 19.9 1.0 CHA A:CLA1106 3.4 20.5 1.0 CHC A:CLA1106 3.6 21.7 1.0 CHD A:CLA1106 3.6 20.0 1.0 OE1 A:GLN121 3.7 50.3 1.0 C3D A:CLA1106 4.2 23.0 1.0 C3B A:CLA1106 4.2 19.6 1.0 C2C A:CLA1106 4.3 20.2 1.0 C2D A:CLA1106 4.3 21.9 1.0 C3C A:CLA1106 4.3 19.8 1.0 C2B A:CLA1106 4.3 20.7 1.0 C3A A:CLA1106 4.3 22.4 1.0 C2A A:CLA1106 4.3 19.5 1.0 CD A:GLN121 4.6 50.0 1.0 C2 A:CLA1126 4.7 29.2 1.0 NE2 A:GLN121 4.9 50.1 1.0 CBD A:CLA1106 4.9 21.9 1.0 C3 A:CLA1126 4.9 27.2 1.0

Magnesium binding site 7 out of 168 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1107 b:26.4 occ:1.00 MG A:CLA1107 0.0 26.4 1.0 NA A:CLA1107 2.0 27.9 1.0 NE2 A:GLN129 2.0 29.5 1.0 ND A:CLA1107 2.0 26.5 1.0 NB A:CLA1107 2.0 25.9 1.0 NC A:CLA1107 2.1 25.5 1.0 C4D A:CLA1107 3.0 26.3 1.0 C4A A:CLA1107 3.0 27.8 1.0 C1A A:CLA1107 3.0 27.8 1.0 C1C A:CLA1107 3.0 24.8 1.0 C1B A:CLA1107 3.1 26.7 1.0 C4B A:CLA1107 3.1 24.8 1.0 C4C A:CLA1107 3.1 26.2 1.0 CD A:GLN129 3.1 30.3 1.0 C1D A:CLA1107 3.1 27.1 1.0 CHB A:CLA1107 3.3 27.6 1.0 CHA A:CLA1107 3.4 26.6 1.0 OE1 A:GLN129 3.5 30.6 1.0 CHC A:CLA1107 3.6 25.2 1.0 CHD A:CLA1107 3.6 28.3 1.0 C3D A:CLA1107 4.2 26.5 1.0 C3B A:CLA1107 4.2 23.6 1.0 C2C A:CLA1107 4.2 25.1 1.0 C3C A:CLA1107 4.3 24.8 1.0 C2B A:CLA1107 4.3 24.7 1.0 C2D A:CLA1107 4.3 26.5 1.0 C3A A:CLA1107 4.3 29.3 1.0 C2A A:CLA1107 4.3 28.9 1.0 CG A:GLN129 4.4 28.5 1.0 CBD A:CLA1107 4.9 26.5 1.0 CG2 A:ILE126 5.0 35.4 1.0

Magnesium binding site 8 out of 168 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1108 b:74.3 occ:1.00 MG A:CLA1108 0.0 74.3 1.0 NA A:CLA1108 2.0 74.4 1.0 ND A:CLA1108 2.0 74.2 1.0 NB A:CLA1108 2.0 74.3 1.0 NC A:CLA1108 2.1 74.8 1.0 NE2 A:HIS315 2.8 44.0 1.0 C4D A:CLA1108 2.9 74.8 1.0 C1A A:CLA1108 3.0 74.2 1.0 C4A A:CLA1108 3.0 74.0 1.0 CD2 A:HIS315 3.0 43.5 1.0 C1C A:CLA1108 3.1 74.5 1.0 C4B A:CLA1108 3.1 74.0 1.0 C1B A:CLA1108 3.1 74.3 1.0 C2 A:CLA1108 3.1 54.5 1.0 C4C A:CLA1108 3.1 74.6 1.0 C1D A:CLA1108 3.2 74.0 1.0 CHB A:CLA1108 3.4 74.3 1.0 CHA A:CLA1108 3.4 74.8 1.0 CHC A:CLA1108 3.6 74.0 1.0 CHD A:CLA1108 3.7 73.9 1.0 O2A A:CLA1108 3.8 59.9 1.0 CE1 A:HIS315 3.8 43.4 1.0 C1 A:CLA1108 3.8 56.5 1.0 C3 A:CLA1108 4.0 53.3 1.0 C4 A:CLA1108 4.0 52.9 1.0 CG A:HIS315 4.1 43.1 1.0 C3D A:CLA1108 4.1 74.6 1.0 C3B A:CLA1108 4.3 74.2 1.0 C2C A:CLA1108 4.3 74.3 1.0 C3C A:CLA1108 4.3 74.0 1.0 C2B A:CLA1108 4.3 73.7 1.0 C2D A:CLA1108 4.3 74.6 1.0 C2A A:CLA1108 4.3 73.0 1.0 C3A A:CLA1108 4.3 73.5 1.0 ND1 A:HIS315 4.4 43.4 1.0 CGA A:CLA1108 4.5 62.8 1.0 O A:LEU311 4.8 43.9 1.0 CBD A:CLA1108 4.9 74.8 1.0 O1A A:CLA1108 4.9 63.7 1.0 CAB A:CLA1108 4.9 74.4 1.0

Magnesium binding site 9 out of 168 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1109 b:49.4 occ:1.00 MG A:CLA1109 0.0 49.4 1.0 NA A:CLA1109 1.9 49.4 1.0 ND A:CLA1109 2.0 48.9 1.0 NC A:CLA1109 2.0 49.0 1.0 NB A:CLA1109 2.1 50.2 1.0 C1A A:CLA1109 2.8 49.8 1.0 C4D A:CLA1109 2.9 49.0 1.0 C4A A:CLA1109 2.9 50.7 1.0 C1C A:CLA1109 3.0 49.7 1.0 C4C A:CLA1109 3.0 49.1 1.0 C1B A:CLA1109 3.1 49.8 1.0 C4B A:CLA1109 3.1 50.5 1.0 C1D A:CLA1109 3.1 49.5 1.0 CHB A:CLA1109 3.4 50.7 1.0 CHC A:CLA1109 3.5 50.0 1.0 CHD A:CLA1109 3.6 49.4 1.0 C2A A:CLA1109 4.1 50.8 1.0 C3D A:CLA1109 4.1 50.0 1.0 C2C A:CLA1109 4.2 50.3 1.0 C3C A:CLA1109 4.2 50.0 1.0 C2D A:CLA1109 4.2 50.0 1.0 CD2 A:TYR186 4.2 58.1 1.0 C3A A:CLA1109 4.2 51.5 1.0 CE2 A:TYR186 4.2 58.1 1.0 C3B A:CLA1109 4.3 50.4 1.0 C2B A:CLA1109 4.3 49.7 1.0

Magnesium binding site 10 out of 168 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1110 b:70.8 occ:1.00 MG A:CLA1110 0.0 70.8 1.0 NA A:CLA1110 2.0 71.1 1.0 NB A:CLA1110 2.0 71.5 1.0 ND A:CLA1110 2.0 70.3 1.0 NC A:CLA1110 2.1 70.8 1.0 C1A A:CLA1110 2.9 71.4 1.0 C4A A:CLA1110 3.0 71.0 1.0 C4D A:CLA1110 3.0 70.5 1.0 C1B A:CLA1110 3.0 72.3 1.0 C4B A:CLA1110 3.1 71.7 1.0 C1C A:CLA1110 3.1 71.1 1.0 C4C A:CLA1110 3.1 71.2 1.0 C1D A:CLA1110 3.1 70.1 1.0 CHB A:CLA1110 3.4 71.7 1.0 CHA A:CLA1110 3.5 70.9 1.0 CHC A:CLA1110 3.6 71.0 1.0 CHD A:CLA1110 3.6 71.0 1.0 C2D A:CLA1110 4.2 70.5 1.0 C3B A:CLA1110 4.2 73.0 1.0 C2C A:CLA1110 4.2 71.6 1.0 C3D A:CLA1110 4.2 70.5 1.0 C3C A:CLA1110 4.3 71.2 1.0 C2B A:CLA1110 4.3 72.5 1.0 C2A A:CLA1110 4.3 71.0 1.0 C3A A:CLA1110 4.3 71.3 1.0

A.Amunts, O.Drory, N.Nelson. The Structure of A Plant Photosystem I Supercomplex at 3.4 A Resolution. Nature V. 447 58 2007.
ISSN: ISSN 0028-0836
PubMed: 17476261
DOI: 10.1038/NATURE05687