Magnesium in PDB 2o1v: Structure of Full Length GRP94 with Adp Bound

The structure of Structure of Full Length GRP94 with Adp Bound, PDB code: 2o1v was solved by D.E.Dollins, J.J.Warren, R.M.Immormino, D.T.Gewirth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	99.080, 108.850, 148.980, 90.00, 90.00, 90.00
R / Rfree (%)	24.8 / 29.9

The binding sites of Magnesium atom in the Structure of Full Length GRP94 with Adp Bound (pdb code 2o1v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Full Length GRP94 with Adp Bound, PDB code: 2o1v:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Structure of Full Length GRP94 with Adp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Full Length GRP94 with Adp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg755 b:12.8 occ:1.00 O3B A:ADP301 1.6 33.1 1.0 O2A A:ADP301 2.1 29.7 1.0 OD1 A:ASN107 2.1 35.0 1.0 O A:HOH891 2.5 22.3 1.0 PB A:ADP301 3.1 32.2 1.0 CG A:ASN107 3.2 35.1 1.0 PA A:ADP301 3.2 32.5 1.0 O3A A:ADP301 3.5 32.9 1.0 ND2 A:ASN107 3.6 34.0 1.0 O5' A:ADP301 4.0 33.1 1.0 O2B A:ADP301 4.0 34.8 1.0 O1B A:ADP301 4.0 32.9 1.0 OD1 A:ASP110 4.3 39.6 1.0 OG A:SER106 4.4 36.3 1.0 CB A:ASN107 4.4 36.0 1.0 OE1 A:GLU103 4.4 39.3 1.0 O1A A:ADP301 4.5 32.8 1.0 O A:GLU103 4.6 38.3 1.0 CA A:ASN107 4.6 36.0 1.0 N A:ASN107 4.6 36.0 1.0 CB A:SER106 4.9 36.1 1.0

Magnesium binding site 2 out of 4 in the Structure of Full Length GRP94 with Adp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Full Length GRP94 with Adp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg756 b:43.0 occ:1.00 O B:HOH837 2.6 27.2 1.0 O B:HOH836 2.6 20.5 1.0 OD2 A:ASP737 3.3 22.0 1.0 CG A:ASP737 3.4 22.4 1.0 OD1 A:ASP737 3.6 24.6 1.0 OE1 A:GLU740 3.9 25.1 1.0 O B:HOH838 4.0 20.7 1.0 CB A:ASP737 4.2 21.2 1.0 O A:HOH857 4.4 20.8 1.0 O B:HOH800 4.4 18.7 1.0 OE2 A:GLU740 4.4 27.1 1.0 CD A:GLU740 4.4 26.6 1.0 O B:GLU642 4.6 21.9 1.0 CA A:ASP737 4.8 21.5 1.0 CB B:GLU642 4.9 22.9 1.0

Magnesium binding site 3 out of 4 in the Structure of Full Length GRP94 with Adp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Full Length GRP94 with Adp Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg755 b:37.2 occ:1.00 O2A B:ADP302 1.8 38.4 1.0 O1B B:ADP302 2.3 39.6 1.0 O B:HOH860 2.4 14.3 1.0 O3B B:ADP302 2.6 39.5 1.0 OD1 B:ASN107 2.7 29.7 1.0 PB B:ADP302 2.8 39.0 1.0 PA B:ADP302 3.0 38.0 1.0 O3A B:ADP302 3.3 38.8 1.0 CG B:ASN107 3.8 28.6 1.0 O5' B:ADP302 3.8 38.2 1.0 ND2 B:ASN107 4.1 28.6 1.0 CA B:GLY198 4.1 33.3 1.0 O1A B:ADP302 4.2 37.6 1.0 O2B B:ADP302 4.3 38.9 1.0 OE1 B:GLU103 4.4 26.1 1.0 C B:GLY198 4.8 33.1 1.0 N B:PHE199 4.9 32.8 1.0

Magnesium binding site 4 out of 4 in the Structure of Full Length GRP94 with Adp Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Full Length GRP94 with Adp Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg756 b:34.2 occ:1.00 OD1 B:ASP737 3.3 20.4 1.0 OE2 B:GLU740 3.3 21.2 1.0 CG B:ASP737 3.3 18.9 1.0 OD2 B:ASP737 3.5 19.3 1.0 CD B:GLU740 3.9 21.6 1.0 CB B:ASP737 4.1 18.1 1.0 OE1 B:GLU740 4.2 21.9 1.0 O A:GLU642 4.3 26.0 1.0 CA B:ASP737 4.6 17.9 1.0 NZ B:LYS733 4.7 6.1 1.0 CG B:GLU740 4.8 21.4 1.0 CB A:GLU642 5.0 25.9 1.0

D.E.Dollins, J.J.Warren, R.M.Immormino, D.T.Gewirth. Structures of GRP94-Nucleotide Complexes Reveal Mechanistic Differences Between the HSP90 Chaperones. Mol.Cell V. 28 41 2007.
ISSN: ISSN 1097-2765
PubMed: 17936703
DOI: 10.1016/J.MOLCEL.2007.08.024