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Magnesium in PDB 2o2q: Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp

Enzymatic activity of Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp

All present enzymatic activity of Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp:
1.5.1.6;

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp, PDB code: 2o2q was solved by Y.Tsybovsky, H.Donato, N.I.Krupenko, C.Davies, S.A.Krupenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 259.400, 194.500, 97.300, 90.00, 108.80, 90.00
R / Rfree (%) 16.8 / 19

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp (pdb code 2o2q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp, PDB code: 2o2q:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 2o2q

Go back to Magnesium Binding Sites List in 2o2q
Magnesium binding site 1 out of 4 in the Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2001

b:55.3
occ:1.00
 O2N A:NAP903 2.5 36.4 0.9
O1N A:NAP903 2.9 33.8 0.9
O2A A:NAP903 3.0 24.4 0.9
PN A:NAP903 3.1 35.5 0.9
O A:HOH3149 3.4 22.2 1.0
O3 A:NAP903 3.9 28.4 0.9
NE1 A:TRP573 3.9 15.1 1.0
O A:HOH3322 3.9 44.0 1.0
PA A:NAP903 4.0 24.4 0.9
O A:HOH3266 4.0 34.0 1.0
O A:HOH3364 4.1 31.3 1.0
O A:HOH3288 4.3 32.0 1.0
O5D A:NAP903 4.6 33.2 0.9
O5B A:NAP903 4.6 23.6 0.9
CD1 A:TRP573 4.7 15.4 1.0
O1X A:NAP903 4.8 16.6 0.9
O A:HOH3255 4.8 32.4 1.0
CE2 A:TRP573 4.9 15.8 1.0

Magnesium binding site 2 out of 4 in 2o2q

Go back to Magnesium Binding Sites List in 2o2q
Magnesium binding site 2 out of 4 in the Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2002

b:64.9
occ:1.00
 O2A B:NAP903 2.4 26.1 0.9
O2N B:NAP903 2.4 35.2 0.9
O1N B:NAP903 2.5 34.1 0.9
PN B:NAP903 2.7 34.5 0.9
O3 B:NAP903 3.4 28.9 0.9
PA B:NAP903 3.4 25.2 0.9
O B:HOH3204 3.9 23.8 1.0
O B:HOH3337 4.0 29.4 1.0
O B:HOH3257 4.3 31.6 1.0
O5D B:NAP903 4.3 32.9 0.9
O5B B:NAP903 4.3 25.0 0.9
NE1 B:TRP573 4.4 16.6 1.0
O B:HOH3339 4.6 30.4 1.0
O1A B:NAP903 4.6 24.9 0.9
O B:HOH3417 4.6 36.2 1.0
O B:HOH3132 5.0 29.2 1.0

Magnesium binding site 3 out of 4 in 2o2q

Go back to Magnesium Binding Sites List in 2o2q
Magnesium binding site 3 out of 4 in the Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg2003

b:48.3
occ:1.00
 O2N C:NAP903 2.5 35.1 0.9
O1N C:NAP903 2.7 32.9 0.9
O2A C:NAP903 2.8 22.1 0.9
PN C:NAP903 2.9 32.9 0.9
O C:HOH3407 3.4 44.1 1.0
O C:HOH3230 3.5 22.0 1.0
O3 C:NAP903 3.7 27.1 0.9
PA C:NAP903 3.8 21.1 0.9
NE1 C:TRP573 4.1 12.4 1.0
O C:HOH3376 4.1 24.0 1.0
O C:HOH3236 4.2 29.4 1.0
O5D C:NAP903 4.4 30.5 0.9
O5B C:NAP903 4.5 20.6 0.9
O C:HOH3393 4.6 38.7 1.0
NZ C:LYS757 4.9 27.8 1.0
O1X C:NAP903 4.9 18.2 0.9
CD1 C:TRP573 4.9 12.9 1.0
O1A C:NAP903 5.0 19.7 0.9

Magnesium binding site 4 out of 4 in 2o2q

Go back to Magnesium Binding Sites List in 2o2q
Magnesium binding site 4 out of 4 in the Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the C-Terminal Domain of Rat 10'Formyltetrahydrofolate Dehydrogenase in Complex with Nadp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2004

b:54.7
occ:1.00
 O2N D:NAP903 2.2 34.8 0.9
O2A D:NAP903 2.5 25.1 0.9
PN D:NAP903 2.7 34.4 0.9
O1N D:NAP903 2.7 34.8 0.9
O D:HOH3229 3.2 24.0 1.0
O3 D:NAP903 3.3 27.9 0.9
PA D:NAP903 3.4 22.9 0.9
O D:HOH3368 3.9 27.5 1.0
O D:HOH3201 4.0 31.8 1.0
NE1 D:TRP573 4.0 14.2 1.0
O5B D:NAP903 4.1 23.2 0.9
O D:HOH3470 4.3 35.3 1.0
O5D D:NAP903 4.3 32.7 0.9
O D:HOH3295 4.3 32.9 1.0
O1A D:NAP903 4.7 23.3 0.9
O1X D:NAP903 4.8 20.5 0.9
CD1 D:TRP573 4.8 15.3 1.0
O D:HOH3126 4.9 25.1 1.0

Reference:

Y.Tsybovsky, H.Donato, N.I.Krupenko, C.Davies, S.A.Krupenko. Crystal Structures of the Carboxyl Terminal Domain of Rat 10-Formyltetrahydrofolate Dehydrogenase: Implications For the Catalytic Mechanism of Aldehyde Dehydrogenases. Biochemistry V. 46 2917 2007.
ISSN: ISSN 0006-2960
PubMed: 17302434
DOI: 10.1021/BI0619573
Page generated: Sun Aug 10 12:12:04 2025

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