Atomistry » Magnesium » PDB 2o56-2oh6 » 2o56
Atomistry »
  Magnesium »
    PDB 2o56-2oh6 »
      2o56 »

Magnesium in PDB 2o56: Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium

Protein crystallography data

The structure of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium, PDB code: 2o56 was solved by Y.Patskovsky, J.M.Sauder, M.Dickey, J.M.Adams, S.Ozyurt, S.R.Wasserman, J.Gerlt, S.K.Burley, S.C.Almo, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 107.662, 140.818, 126.838, 90.00, 105.94, 90.00
R / Rfree (%) 20.9 / 25.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium (pdb code 2o56). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium, PDB code: 2o56:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 1 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2001

b:38.1
occ:1.00
 OE2 A:GLU245 2.2 39.7 1.0
O A:HOH2200 2.2 49.6 1.0
OE1 A:GLU271 2.3 38.0 1.0
OE1 A:GLU219 2.3 43.1 1.0
O A:HOH2074 2.4 40.1 1.0
CD A:GLU271 3.1 38.1 1.0
CD A:GLU219 3.3 44.5 1.0
OE2 A:GLU271 3.3 38.2 1.0
CD A:GLU245 3.4 35.5 1.0
OE2 A:GLU219 3.5 36.3 1.0
NZ A:LYS170 3.7 26.6 1.0
O A:HOH2014 4.0 29.5 1.0
OE1 A:GLU246 4.1 37.6 1.0
NE2 A:GLN134 4.2 46.7 1.0
OE1 A:GLU245 4.2 40.7 1.0
CG A:GLU245 4.2 25.8 1.0
CD2 A:HIS321 4.3 28.9 1.0
O A:HOH2112 4.4 48.7 1.0
NE2 A:HIS321 4.5 29.0 1.0
CG A:GLU271 4.6 29.9 1.0
CE A:LYS170 4.6 26.4 1.0
O A:HOH2018 4.6 26.8 1.0
CD2 A:HIS221 4.7 35.6 1.0
CG A:GLU219 4.7 26.9 1.0
NE2 A:HIS221 4.9 34.2 1.0
OE2 A:GLU346 4.9 34.0 1.0
CD A:GLU246 5.0 40.8 1.0

Magnesium binding site 2 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 2 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2002

b:37.2
occ:1.00
 OE2 B:GLU245 2.1 41.1 1.0
O B:HOH2237 2.3 41.4 1.0
OE1 B:GLU219 2.3 43.4 1.0
OE1 B:GLU271 2.4 36.7 1.0
O B:HOH2145 2.5 39.5 1.0
CD B:GLU271 3.2 37.7 1.0
CD B:GLU219 3.2 44.9 1.0
CD B:GLU245 3.3 35.2 1.0
OE2 B:GLU271 3.4 37.1 1.0
OE2 B:GLU219 3.4 33.7 1.0
NZ B:LYS170 3.8 24.6 1.0
CG B:GLU245 4.1 28.4 1.0
O B:HOH2047 4.1 29.9 1.0
OE1 B:GLU245 4.1 40.3 1.0
O B:HOH2058 4.2 43.1 1.0
OE1 B:GLU246 4.2 37.0 1.0
NE2 B:GLN134 4.3 23.0 0.5
CD2 B:HIS321 4.4 28.6 1.0
NE2 B:HIS321 4.5 28.1 1.0
O B:HOH2023 4.5 22.1 1.0
CE B:LYS170 4.6 26.1 1.0
CG B:GLU219 4.6 22.4 1.0
CG B:GLU271 4.6 30.3 1.0
CD2 B:HIS221 4.8 38.6 1.0
CG B:GLU246 4.8 26.9 1.0
CD B:GLU246 4.8 40.5 1.0

Magnesium binding site 3 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 3 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg2003

b:34.2
occ:1.00
 OE2 C:GLU245 2.1 40.4 1.0
OE1 C:GLU271 2.2 34.8 1.0
O C:HOH2073 2.3 42.2 1.0
OE1 C:GLU219 2.3 43.0 1.0
O C:HOH2192 2.4 47.9 1.0
CD C:GLU271 3.1 38.1 1.0
CD C:GLU219 3.2 45.2 1.0
OE2 C:GLU271 3.2 39.3 1.0
CD C:GLU245 3.3 35.0 1.0
OE2 C:GLU219 3.3 35.3 1.0
O C:HOH2193 3.8 56.8 1.0
NZ C:LYS170 3.9 25.8 1.0
O C:HOH2087 4.0 31.1 1.0
OE1 C:GLU246 4.0 38.0 1.0
OE1 C:GLU245 4.1 39.2 1.0
CG C:GLU245 4.2 25.6 1.0
NE2 C:GLN134 4.3 40.1 1.0
CD2 C:HIS321 4.3 30.0 1.0
O C:HOH2035 4.5 34.0 1.0
CG C:GLU271 4.5 30.3 1.0
NE2 C:HIS321 4.6 26.2 1.0
CG C:GLU219 4.6 23.8 1.0
CD2 C:HIS221 4.6 36.6 1.0
CE C:LYS170 4.7 26.4 1.0
CD C:GLU246 4.7 41.5 1.0
CG C:GLU246 4.9 30.1 1.0
NE2 C:HIS221 4.9 36.1 1.0

Magnesium binding site 4 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 4 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2004

b:36.6
occ:1.00
 OE2 D:GLU245 2.2 39.8 1.0
OE1 D:GLU271 2.2 35.9 1.0
O D:HOH2205 2.3 51.2 1.0
O D:HOH2053 2.3 40.0 1.0
OE1 D:GLU219 2.3 43.8 1.0
CD D:GLU271 3.1 38.0 1.0
CD D:GLU219 3.3 45.2 1.0
CD D:GLU245 3.3 35.7 1.0
OE2 D:GLU271 3.4 38.1 1.0
OE2 D:GLU219 3.5 39.4 1.0
NZ D:LYS170 3.8 25.7 1.0
O D:HOH2029 3.9 31.1 1.0
OE1 D:GLU246 4.0 39.8 1.0
CG D:GLU245 4.1 28.2 1.0
OE1 D:GLU245 4.2 41.7 1.0
CD2 D:HIS321 4.3 31.5 1.0
NE2 D:GLN134 4.3 45.5 1.0
O D:HOH2201 4.4 50.9 1.0
O D:HOH2202 4.4 51.7 1.0
NE2 D:HIS321 4.5 30.0 1.0
CG D:GLU271 4.5 29.6 1.0
O D:HOH2023 4.6 29.1 1.0
CE D:LYS170 4.6 26.2 1.0
CG D:GLU219 4.7 26.6 1.0
CD2 D:HIS221 4.7 35.8 1.0
CD D:GLU246 4.8 42.0 1.0
CG D:GLU246 4.9 31.3 1.0
NE2 D:HIS221 4.9 34.9 1.0

Magnesium binding site 5 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 5 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg2005

b:37.3
occ:1.00
 OE2 E:GLU245 2.2 41.8 1.0
O E:HOH2234 2.3 44.8 1.0
OE1 E:GLU219 2.3 42.1 1.0
OE1 E:GLU271 2.4 37.1 1.0
O E:HOH2175 2.5 41.6 1.0
O E:HOH2202 3.0 59.4 1.0
CD E:GLU219 3.2 44.5 1.0
CD E:GLU271 3.2 39.6 1.0
OE2 E:GLU271 3.3 39.1 1.0
OE2 E:GLU219 3.4 32.6 1.0
CD E:GLU245 3.4 35.3 1.0
NZ E:LYS170 3.9 23.7 1.0
OE1 E:GLU246 4.0 38.8 1.0
CG E:GLU245 4.2 28.4 1.0
OE1 E:GLU245 4.2 40.7 1.0
O E:HOH2094 4.3 29.6 1.0
NE2 E:GLN134 4.3 41.5 1.0
O E:HOH2055 4.3 52.0 1.0
CD2 E:HIS321 4.4 29.7 1.0
O E:HOH2014 4.5 25.2 1.0
NE2 E:HIS321 4.5 30.0 1.0
CD2 E:HIS221 4.6 37.1 1.0
CG E:GLU219 4.6 22.8 1.0
CG E:GLU271 4.6 30.0 1.0
CE E:LYS170 4.7 28.0 1.0
CD E:GLU246 4.7 41.0 1.0
CG E:GLU246 4.8 29.0 1.0
NE2 E:HIS221 4.9 33.6 1.0

Magnesium binding site 6 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 6 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg2006

b:37.1
occ:1.00
 OE2 F:GLU245 2.2 39.1 1.0
OE1 F:GLU271 2.3 35.4 1.0
OE1 F:GLU219 2.3 43.0 1.0
O F:HOH2072 2.3 37.4 1.0
CD F:GLU271 3.1 37.6 1.0
CD F:GLU219 3.2 45.7 1.0
OE2 F:GLU271 3.3 36.5 1.0
CD F:GLU245 3.4 34.7 1.0
OE2 F:GLU219 3.4 35.5 1.0
NZ F:LYS170 3.8 24.2 1.0
O F:HOH2137 3.9 51.7 1.0
OE1 F:GLU246 4.0 39.4 1.0
O F:HOH2065 4.1 32.6 1.0
OE1 F:GLU245 4.2 40.9 1.0
NE2 F:GLN134 4.2 37.8 1.0
CG F:GLU245 4.3 27.0 1.0
CD2 F:HIS321 4.3 29.6 1.0
O F:HOH2038 4.5 27.7 1.0
NE2 F:HIS321 4.5 28.3 1.0
CG F:GLU271 4.5 31.0 1.0
CG F:GLU219 4.6 24.5 1.0
CD2 F:HIS221 4.6 37.4 1.0
CE F:LYS170 4.7 26.5 1.0
CD F:GLU246 4.8 41.4 1.0
CG F:GLU246 4.9 29.4 1.0
NE2 F:HIS221 4.9 35.1 1.0
OE2 F:GLU346 5.0 33.2 1.0

Magnesium binding site 7 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 7 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg2007

b:27.6
occ:1.00
 OE2 G:GLU245 2.1 38.7 1.0
OE1 G:GLU219 2.3 40.5 1.0
O G:HOH2227 2.3 47.1 1.0
OE1 G:GLU271 2.3 36.3 1.0
O G:HOH2191 2.3 50.4 1.0
O G:HOH2107 2.4 33.3 1.0
CD G:GLU219 3.1 44.3 1.0
CD G:GLU245 3.2 33.7 1.0
CD G:GLU271 3.2 38.6 1.0
OE2 G:GLU219 3.2 34.2 1.0
OE2 G:GLU271 3.5 35.5 1.0
NZ G:LYS170 3.9 24.9 1.0
OE1 G:GLU246 4.0 38.1 1.0
O G:HOH2063 4.0 28.4 1.0
OE1 G:GLU245 4.0 39.8 1.0
CG G:GLU245 4.0 27.0 1.0
NE2 G:GLN134 4.3 35.2 1.0
CD2 G:HIS321 4.4 28.0 1.0
O G:HOH2144 4.4 49.0 1.0
NE2 G:HIS321 4.5 28.8 1.0
CG G:GLU219 4.5 25.6 1.0
CD2 G:HIS221 4.5 36.7 1.0
CG G:GLU271 4.6 27.9 1.0
CE G:LYS170 4.6 24.1 1.0
O G:HOH2036 4.7 24.6 1.0
CD G:GLU246 4.8 40.4 1.0
NE2 G:HIS221 4.8 34.9 1.0
CG G:GLU246 4.9 27.1 1.0

Magnesium binding site 8 out of 8 in 2o56

Go back to Magnesium Binding Sites List in 2o56
Magnesium binding site 8 out of 8 in the Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of A Member of the Enolase Superfamily From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg2008

b:30.6
occ:1.00
 OE2 H:GLU245 2.1 39.0 1.0
OE1 H:GLU271 2.3 37.4 1.0
O H:HOH2115 2.3 35.3 1.0
OE1 H:GLU219 2.3 41.4 1.0
O H:HOH2215 2.7 46.9 1.0
CD H:GLU219 3.2 43.6 1.0
CD H:GLU245 3.2 34.5 1.0
CD H:GLU271 3.2 38.4 1.0
OE2 H:GLU219 3.4 35.8 1.0
OE2 H:GLU271 3.5 34.8 1.0
NZ H:LYS170 3.8 22.1 1.0
OE1 H:GLU246 3.9 36.3 1.0
O H:HOH2098 4.0 31.5 1.0
OE1 H:GLU245 4.0 40.0 1.0
CG H:GLU245 4.1 25.6 1.0
CD2 H:HIS321 4.3 29.3 1.0
NE2 H:GLN134 4.3 29.4 1.0
NE2 H:HIS321 4.5 30.3 1.0
CG H:GLU219 4.6 26.6 1.0
CG H:GLU271 4.6 29.9 1.0
O H:HOH2216 4.6 45.4 1.0
CE H:LYS170 4.6 26.8 1.0
CD2 H:HIS221 4.7 37.6 1.0
CD H:GLU246 4.7 39.6 1.0
O H:HOH2035 4.7 25.2 1.0
CG H:GLU246 4.9 27.6 1.0
NE2 H:HIS221 5.0 33.6 1.0

Reference:

Y.Patskovsky, J.M.Sauder, M.Dickey, J.M.Adams, S.Ozyurt, S.R.Wasserman, J.Gerlt, S.K.Burley, S.C.Almo. Crystal Structure of Putative Enolase From Salmonella Typhimurium LT2 To Be Published.
Page generated: Wed Aug 14 01:23:04 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy