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Magnesium in PDB 2o7o: Crystal Structure Analysis of Tetr(D) Complex with Doxycycline

Protein crystallography data

The structure of Crystal Structure Analysis of Tetr(D) Complex with Doxycycline, PDB code: 2o7o was solved by A.Aleksandrov, J.Proft, W.Hinrichs, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.34 / 1.89
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 65.830, 65.830, 179.502, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 24.3

Other elements in 2o7o:

The structure of Crystal Structure Analysis of Tetr(D) Complex with Doxycycline also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure Analysis of Tetr(D) Complex with Doxycycline (pdb code 2o7o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure Analysis of Tetr(D) Complex with Doxycycline, PDB code: 2o7o:

Magnesium binding site 1 out of 1 in 2o7o

Go back to Magnesium Binding Sites List in 2o7o
Magnesium binding site 1 out of 1 in the Crystal Structure Analysis of Tetr(D) Complex with Doxycycline


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure Analysis of Tetr(D) Complex with Doxycycline within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg223

b:28.4
occ:1.00
O12 A:DXT222 1.9 27.3 1.0
O A:HOH226 2.1 30.9 1.0
O A:HOH225 2.1 26.7 1.0
NE2 A:HIS100 2.1 26.2 1.0
O11 A:DXT222 2.2 25.9 1.0
O A:HOH224 2.2 29.7 1.0
CE1 A:HIS100 2.9 30.1 1.0
C12 A:DXT222 3.0 26.4 1.0
C11 A:DXT222 3.1 26.6 1.0
CD2 A:HIS100 3.2 26.9 1.0
C5B A:DXT222 3.5 26.4 1.0
O A:HOH321 4.0 35.5 1.0
OG1 A:THR103 4.1 29.9 1.0
ND1 A:HIS100 4.1 27.2 1.0
O A:THR103 4.1 29.1 1.0
O10 A:DXT222 4.2 27.6 1.0
O13 A:DXT222 4.2 30.1 1.0
C4B A:DXT222 4.2 27.2 1.0
CG A:HIS100 4.3 28.7 1.0
O A:HOH304 4.3 37.5 1.0
C6B A:DXT222 4.5 29.2 1.0
C A:THR103 4.8 31.8 1.0
C10 A:DXT222 4.8 29.5 1.0
O A:HIS100 4.9 28.3 1.0
O1 A:DXT222 4.9 27.2 1.0
C5A A:DXT222 5.0 24.4 1.0

Reference:

A.Aleksandrov, J.Proft, W.Hinrichs, T.Simonson. Protonation Patterns in Tetracycline:Tet Repressor Recognition: Simulations and Experiments Chembiochem V. 8 675 2007.
ISSN: ISSN 1439-4227
PubMed: 17361981
DOI: 10.1002/CBIC.200600535
Page generated: Mon Dec 14 07:31:50 2020

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