Magnesium in PDB 2oh5: The Crystal Structure of Infectious Cypovirus Polyhedra

The structure of The Crystal Structure of Infectious Cypovirus Polyhedra, PDB code: 2oh5 was solved by F.Coulibaly, E.Chiu, K.Ikeda, S.Gutmann, P.W.Haebel, C.Schulze-Briese, H.Mori, P.Metcalf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.76 / 1.98
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	102.777, 102.777, 102.777, 90.00, 90.00, 90.00
R / Rfree (%)	9.3 / 15.4

The structure of The Crystal Structure of Infectious Cypovirus Polyhedra also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the The Crystal Structure of Infectious Cypovirus Polyhedra (pdb code 2oh5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of Infectious Cypovirus Polyhedra, PDB code: 2oh5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Crystal Structure of Infectious Cypovirus Polyhedra


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Infectious Cypovirus Polyhedra within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg250 b:36.5 occ:1.00 O3G A:CTP254 2.0 28.8 1.0 O1B A:CTP254 2.1 30.2 1.0 O1A A:CTP254 2.1 29.9 1.0 O A:HOH535 2.2 22.2 1.0 O A:HOH537 2.2 37.8 1.0 O A:HOH536 2.3 29.0 1.0 PB A:CTP254 3.1 29.7 1.0 PA A:CTP254 3.2 32.6 1.0 PG A:CTP254 3.4 27.6 1.0 O3A A:CTP254 3.4 31.7 1.0 O3B A:CTP254 3.7 29.0 1.0 C5' A:CTP254 3.8 37.9 1.0 O2G A:CTP254 3.8 29.7 1.0 O5' A:CTP254 3.9 35.4 1.0 OG A:SER79 4.0 17.8 1.0 C3' A:CTP254 4.5 40.6 1.0 O2B A:CTP254 4.5 30.5 1.0 O2A A:CTP254 4.5 25.9 1.0 O1G A:CTP254 4.6 27.9 1.0 C4' A:CTP254 4.8 40.0 1.0 O3' A:CTP254 4.9 41.7 1.0

Magnesium binding site 2 out of 2 in the The Crystal Structure of Infectious Cypovirus Polyhedra


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Infectious Cypovirus Polyhedra within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg251 b:29.5 occ:1.00 O1B A:ATP253 2.0 28.5 1.0 O2G A:ATP253 2.0 32.4 1.0 O1A A:ATP253 2.1 33.5 1.0 PB A:ATP253 3.0 29.2 1.0 PG A:ATP253 3.2 33.1 1.0 PA A:ATP253 3.2 31.1 1.0 O3B A:ATP253 3.5 33.4 1.0 O3A A:ATP253 3.5 32.0 1.0 O1G A:ATP253 3.9 32.2 1.0 NZ A:LYS152 4.1 16.1 1.0 O2A A:ATP253 4.2 32.9 1.0 O3G A:ATP253 4.5 32.0 1.0 O2B A:ATP253 4.5 28.4 1.0 O5' A:ATP253 4.5 30.4 1.0

F.Coulibaly, E.Chiu, K.Ikeda, S.Gutmann, P.W.Haebel, C.Schulze-Briese, H.Mori, P.Metcalf. The Molecular Organization of Cypovirus Polyhedra. Nature V. 446 97 2007.
ISSN: ISSN 0028-0836
PubMed: 17330045
DOI: 10.1038/NATURE05628