Magnesium in PDB 2oh7: The Crystal Structure of Cypovirus Polyhedra Containing the Human Zip- Kinase

The structure of The Crystal Structure of Cypovirus Polyhedra Containing the Human Zip- Kinase, PDB code: 2oh7 was solved by F.Coulibaly, E.Chiu, K.Ikeda, S.Gutmann, P.W.Haebel, C.Schulze-Briese, H.Mori, P.Metcalf, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.80 / 2.45
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	102.742, 102.742, 102.742, 90.00, 90.00, 90.00
R / Rfree (%)	11.2 / 22.1

The structure of The Crystal Structure of Cypovirus Polyhedra Containing the Human Zip- Kinase also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the The Crystal Structure of Cypovirus Polyhedra Containing the Human Zip- Kinase (pdb code 2oh7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of Cypovirus Polyhedra Containing the Human Zip- Kinase, PDB code: 2oh7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Crystal Structure of Cypovirus Polyhedra Containing the Human Zip- Kinase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Cypovirus Polyhedra Containing the Human Zip- Kinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg250 b:67.1 occ:1.00 O1A A:CTP254 2.3 54.7 1.0 O3G A:CTP254 2.8 49.8 1.0 OG A:SER79 3.5 25.4 1.0 PA A:CTP254 3.7 57.6 1.0 N A:TYR80 4.1 23.4 1.0 CB A:TYR80 4.2 22.7 1.0 O1B A:CTP254 4.3 57.0 1.0 PG A:CTP254 4.3 50.9 1.0 O3A A:CTP254 4.3 58.5 1.0 O2A A:CTP254 4.5 55.5 1.0 C3' A:CTP254 4.6 63.2 1.0 CA A:TYR80 4.7 22.6 1.0 O1G A:CTP254 4.8 51.8 1.0 O A:HOH365 4.8 31.6 1.0 CB A:SER79 4.8 24.5 1.0 PB A:CTP254 4.8 56.8 1.0 O5' A:CTP254 4.9 60.6 1.0 C5' A:CTP254 4.9 62.0 1.0 O3' A:CTP254 4.9 62.9 1.0 N A:SER79 5.0 24.8 1.0 C A:SER79 5.0 24.3 1.0

Magnesium binding site 2 out of 2 in the The Crystal Structure of Cypovirus Polyhedra Containing the Human Zip- Kinase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Cypovirus Polyhedra Containing the Human Zip- Kinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg251 b:44.1 occ:1.00 O1A A:ATP253 2.2 46.2 1.0 O1B A:ATP253 2.4 46.0 1.0 O2G A:ATP253 2.4 44.8 1.0 PB A:ATP253 3.3 47.2 1.0 PG A:ATP253 3.4 45.2 1.0 PA A:ATP253 3.4 44.6 1.0 O1G A:ATP253 3.7 46.8 1.0 O3B A:ATP253 3.7 47.5 1.0 O3A A:ATP253 3.8 46.6 1.0 O2A A:ATP253 4.1 47.7 1.0 NH1 A:ARG155 4.3 41.9 1.0 N A:ASP156 4.4 27.4 1.0 CA A:ASP156 4.8 27.4 1.0 O5' A:ATP253 4.8 43.5 1.0 O3G A:ATP253 4.8 46.5 1.0 O2B A:ATP253 4.9 45.6 1.0 CZ A:ARG155 4.9 40.7 1.0 NH2 A:ARG155 5.0 42.0 1.0

F.Coulibaly, E.Chiu, K.Ikeda, S.Gutmann, P.W.Haebel, C.Schulze-Briese, H.Mori, P.Metcalf. The Molecular Organization of Cypovirus Polyhedra. Nature V. 446 97 2007.
ISSN: ISSN 0028-0836
PubMed: 17330045
DOI: 10.1038/NATURE05628