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Magnesium in PDB 2ouy: Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp.

Enzymatic activity of Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp.

All present enzymatic activity of Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp.:
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp., PDB code: 2ouy was solved by H.C.Wang, Y.D.Liu, J.Hou, M.Y.Zheng, H.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.391, 82.266, 155.931, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 25.3

Other elements in 2ouy:

The structure of Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp. also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp. (pdb code 2ouy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp., PDB code: 2ouy:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2ouy

Go back to Magnesium Binding Sites List in 2ouy
Magnesium binding site 1 out of 2 in the Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg778

b:28.2
occ:1.00
ND2 A:ASN564 2.2 25.7 1.0
O A:HOH5 2.3 27.9 1.0
O A:HOH3 2.4 24.8 1.0
O A:HOH6 2.4 43.3 1.0
O A:HOH1 2.4 24.2 1.0
O A:HOH4 2.4 21.5 1.0
CG A:ASN564 3.2 25.2 1.0
OD1 A:ASN564 3.4 27.4 1.0
O1P A:CMP779 3.7 42.8 1.0
OE2 A:GLU592 4.0 21.9 1.0
O A:HOH2 4.0 29.0 1.0
ZN A:ZN777 4.1 33.1 1.0
NE2 A:HIS595 4.2 20.2 1.0
OG1 A:THR633 4.3 16.9 1.0
CD2 A:HIS525 4.4 19.2 1.0
O A:HIS563 4.5 22.1 1.0
O2P A:CMP779 4.5 43.0 1.0
CD2 A:HIS595 4.5 20.4 1.0
OD2 A:ASP674 4.5 21.4 1.0
P A:CMP779 4.5 43.0 1.0
O A:THR633 4.5 16.8 1.0
CB A:ASN564 4.6 24.3 1.0
NE2 A:HIS525 4.6 19.8 1.0
CD2 A:HIS563 4.6 24.6 1.0
CD2 A:HIS567 4.7 24.6 1.0
CB A:THR633 4.8 16.9 1.0
CD A:GLU592 4.9 22.2 1.0
CA A:ASN564 5.0 23.3 1.0
O A:HOH8 5.0 23.3 1.0
O5' A:CMP779 5.0 43.0 1.0

Magnesium binding site 2 out of 2 in 2ouy

Go back to Magnesium Binding Sites List in 2ouy
Magnesium binding site 2 out of 2 in the Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of PDE10A2 Mutant D564A in Complex with Camp. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg778

b:34.1
occ:1.00
ND2 B:ASN564 2.2 32.0 1.0
O B:HOH15 2.4 61.0 1.0
O B:HOH14 2.5 30.9 1.0
O B:HOH11 2.5 30.0 1.0
O B:HOH16 2.7 53.7 1.0
O B:HOH13 2.7 43.9 1.0
CG B:ASN564 3.3 31.3 1.0
OG1 B:THR633 3.4 23.4 1.0
O B:HIS563 3.7 27.4 1.0
OE2 B:GLU592 3.7 35.5 1.0
OD1 B:ASN564 3.8 32.7 1.0
NE2 B:HIS595 4.0 30.7 1.0
CD2 B:HIS563 4.0 28.2 1.0
CD2 B:HIS595 4.0 30.9 1.0
CB B:THR633 4.0 23.3 1.0
ZN B:ZN777 4.2 34.8 1.0
O B:THR633 4.3 23.5 1.0
C B:HIS563 4.6 27.5 1.0
CB B:ASN564 4.6 30.5 1.0
CD B:GLU592 4.6 35.7 1.0
NE2 B:HIS563 4.7 29.4 1.0
CD2 B:HIS567 4.7 37.7 1.0
CG B:GLU592 4.7 36.0 1.0
CA B:ASN564 4.7 29.5 1.0
C B:THR633 4.8 23.6 1.0
CG B:HIS563 4.9 27.9 1.0

Reference:

H.Wang, Y.Liu, J.Hou, M.Zheng, H.Robinson, H.Ke. From the Cover: Structural Insight Into Substrate Specificity of Phosphodiesterase 10. Proc.Natl.Acad.Sci.Usa V. 104 5782 2007.
ISSN: ISSN 0027-8424
PubMed: 17389385
DOI: 10.1073/PNAS.0700279104
Page generated: Mon Dec 14 07:33:46 2020

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