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Magnesium in PDB 2p06: Crystal Structure of A Predicted Coding Region AF_0060 From Archaeoglobus Fulgidus Dsm 4304

Protein crystallography data

The structure of Crystal Structure of A Predicted Coding Region AF_0060 From Archaeoglobus Fulgidus Dsm 4304, PDB code: 2p06 was solved by B.Nocek, X.Xu, Y.Koniyenko, A.Yakounine, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.67 / 2.10
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 80.083, 80.083, 106.771, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 18.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Predicted Coding Region AF_0060 From Archaeoglobus Fulgidus Dsm 4304 (pdb code 2p06). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Predicted Coding Region AF_0060 From Archaeoglobus Fulgidus Dsm 4304, PDB code: 2p06:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2p06

Go back to Magnesium Binding Sites List in 2p06
Magnesium binding site 1 out of 2 in the Crystal Structure of A Predicted Coding Region AF_0060 From Archaeoglobus Fulgidus Dsm 4304


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Predicted Coding Region AF_0060 From Archaeoglobus Fulgidus Dsm 4304 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg101

b:12.1
occ:1.00
OE1 A:GLU50 2.2 31.7 1.0
O A:HOH154 2.3 60.0 1.0
OD2 A:ASP69 2.3 17.2 1.0
OE1 A:GLU47 2.3 25.6 1.0
OE1 A:GLU66 2.3 33.2 1.0
OE2 A:GLU66 2.4 31.9 1.0
CD A:GLU66 2.7 29.7 1.0
CG A:ASP69 3.3 18.4 1.0
CD A:GLU50 3.4 29.4 1.0
CD A:GLU47 3.5 23.8 1.0
CB A:ASP69 3.7 16.9 1.0
O A:HOH117 3.9 57.3 1.0
OE2 A:GLU47 4.0 26.4 1.0
CB A:GLU50 4.0 28.5 1.0
CG A:GLU66 4.2 25.7 1.0
OE2 A:GLU50 4.3 33.2 1.0
CG A:GLU50 4.3 29.1 1.0
OD1 A:ASP69 4.4 16.3 1.0
NH2 A:ARG21 4.4 27.6 1.0
CG A:GLU47 4.7 23.3 1.0
CA A:GLU47 4.7 23.9 1.0
CB A:GLU47 4.7 23.8 1.0
CA A:GLU66 4.8 21.5 1.0
O A:GLU47 4.9 24.5 1.0
CB A:GLU66 5.0 21.9 1.0

Magnesium binding site 2 out of 2 in 2p06

Go back to Magnesium Binding Sites List in 2p06
Magnesium binding site 2 out of 2 in the Crystal Structure of A Predicted Coding Region AF_0060 From Archaeoglobus Fulgidus Dsm 4304


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Predicted Coding Region AF_0060 From Archaeoglobus Fulgidus Dsm 4304 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg101

b:11.8
occ:1.00
O B:HOH160 2.1 68.9 1.0
OE1 B:GLU50 2.1 34.6 1.0
OE1 B:GLU66 2.2 31.9 1.0
OE1 B:GLU47 2.2 22.1 1.0
O B:HOH121 2.5 42.2 1.0
OD2 B:ASP69 2.5 22.0 1.0
CD B:GLU50 3.3 31.6 1.0
CD B:GLU66 3.4 30.9 1.0
CD B:GLU47 3.4 22.9 1.0
CG B:ASP69 3.4 22.3 1.0
CB B:ASP69 3.7 20.8 1.0
CB B:GLU50 3.9 30.4 1.0
O B:HOH156 3.9 66.6 1.0
OE2 B:GLU66 3.9 35.5 1.0
OE2 B:GLU47 4.0 24.8 1.0
CG B:GLU50 4.2 31.4 1.0
OE2 B:GLU50 4.2 34.1 1.0
NH2 B:ARG21 4.4 36.6 1.0
CA B:GLU47 4.6 24.9 1.0
OD1 B:ASP69 4.6 21.4 1.0
CG B:GLU47 4.6 25.0 1.0
CB B:GLU47 4.6 24.3 1.0
CA B:GLU66 4.6 24.2 1.0
CG B:GLU66 4.6 26.8 1.0
O B:GLU47 4.7 26.5 1.0
CB B:GLU66 4.7 24.6 1.0

Reference:

B.Nocek, X.Xu, A.Savchenko, A.Edwards, A.Joachimiak. Crystal Structure of A Predicted Coding Region AF_0060 From Archaeoglobus Fulgidus Dsm 4304 To Be Published.
Page generated: Wed Aug 14 02:01:55 2024

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