Magnesium in PDB 2pc5: Native Crystal Structure Analysis on Arabidopsis Dutpase

All present enzymatic activity of Native Crystal Structure Analysis on Arabidopsis Dutpase:
3.6.1.23;

The structure of Native Crystal Structure Analysis on Arabidopsis Dutpase, PDB code: 2pc5 was solved by H.Moriyama, M.Bajaj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.46 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	69.903, 70.860, 75.555, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 25.1

The binding sites of Magnesium atom in the Native Crystal Structure Analysis on Arabidopsis Dutpase (pdb code 2pc5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Native Crystal Structure Analysis on Arabidopsis Dutpase, PDB code: 2pc5:

Magnesium binding site 1 out of 1 in the Native Crystal Structure Analysis on Arabidopsis Dutpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Native Crystal Structure Analysis on Arabidopsis Dutpase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg167 b:8.9 occ:1.00 OE1 A:GLU138 2.0 29.0 1.0 OE1 B:GLU138 2.1 32.1 1.0 OE1 C:GLU138 2.1 26.1 1.0 CD A:GLU138 2.8 17.4 1.0 CD B:GLU138 2.9 22.9 1.0 OE2 A:GLU138 2.9 15.0 1.0 CD C:GLU138 3.0 16.3 1.0 OE2 B:GLU138 3.1 18.4 1.0 OE2 C:GLU138 3.2 17.5 1.0 OH B:TYR82 3.8 13.6 1.0 OH C:TYR82 3.9 14.6 1.0 OH A:TYR82 3.9 12.4 1.0 NE C:ARG84 3.9 9.7 1.0 NE A:ARG84 4.0 8.9 1.0 NE B:ARG84 4.0 8.2 1.0 CD B:ARG84 4.1 7.5 1.0 O A:HOH207 4.2 29.2 1.0 CD C:ARG84 4.2 8.8 1.0 CG A:GLU138 4.2 17.3 1.0 CD A:ARG84 4.3 8.8 1.0 CG B:GLU138 4.3 17.9 1.0 CG C:GLU138 4.4 16.9 1.0 CZ C:ARG84 4.6 12.0 1.0 CZ A:ARG84 4.7 13.7 1.0 CZ B:ARG84 4.7 9.9 1.0 CB A:GLU138 4.8 14.4 1.0 NH2 C:ARG84 4.9 12.2 1.0 CB C:GLU138 4.9 15.2 1.0 CB B:GLU138 4.9 13.6 1.0 CZ A:TYR82 4.9 6.8 1.0 NH2 A:ARG84 4.9 9.1 1.0 CZ C:TYR82 5.0 9.5 1.0 CZ B:TYR82 5.0 10.5 1.0

M.Bajaj, H.Moriyama. Purification, Crystallization and Preliminary Crystallographic Analysis of Deoxyuridine Triphosphate Nucleotidohydrolase From Arabidopsis Thaliana. Acta Crystallogr.,Sect.F V. 63 409 2007.
ISSN: ESSN 1744-3091
PubMed: 17565183
DOI: 10.1107/S1744309107016004