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Magnesium in PDB 2pcl: Crystal Structure of Abc Transporter with Complex (AQ_297) From Aquifex Aeolicus VF5

Protein crystallography data

The structure of Crystal Structure of Abc Transporter with Complex (AQ_297) From Aquifex Aeolicus VF5, PDB code: 2pcl was solved by J.Jeyakanthan, S.P.Kanaujia, Z.A.Rafi, K.Sekar, A.Ebihara, N.Nakagawa, S.Kuramitsu, A.Shinkai, Y.Shiro, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.80 / 1.70
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 104.177, 104.177, 135.046, 90.00, 90.00, 120.00
R / Rfree (%) 20.1 / 24.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Abc Transporter with Complex (AQ_297) From Aquifex Aeolicus VF5 (pdb code 2pcl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Abc Transporter with Complex (AQ_297) From Aquifex Aeolicus VF5, PDB code: 2pcl:

Magnesium binding site 1 out of 1 in 2pcl

Go back to Magnesium Binding Sites List in 2pcl
Magnesium binding site 1 out of 1 in the Crystal Structure of Abc Transporter with Complex (AQ_297) From Aquifex Aeolicus VF5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Abc Transporter with Complex (AQ_297) From Aquifex Aeolicus VF5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg225

b:19.3
occ:1.00
O A:HOH470 3.0 47.8 1.0
OG1 A:THR197 3.0 20.0 1.0
OG1 A:THR168 3.0 23.8 1.0
N A:THR168 3.3 20.9 1.0
CD A:PRO167 3.4 18.7 1.0
N A:PRO167 3.5 18.8 1.0
C A:GLU166 3.6 17.9 1.0
CA A:GLU166 3.7 18.6 1.0
CB A:THR197 3.7 16.8 1.0
CB A:THR168 3.8 21.6 1.0
CD1 A:LEU202 4.0 22.3 1.0
CA A:THR168 4.0 22.3 1.0
CG A:PRO167 4.0 20.7 1.0
OE1 A:GLU166 4.1 33.4 1.0
CG2 A:THR168 4.1 22.2 1.0
CA A:THR197 4.2 17.8 1.0
O A:GLU166 4.3 19.4 1.0
C A:PRO167 4.4 21.0 1.0
O A:VAL196 4.4 15.7 1.0
C A:THR168 4.4 24.1 1.0
N A:GLY169 4.5 23.2 1.0
CA A:PRO167 4.5 19.0 1.0
N A:GLU166 4.6 16.7 1.0
CB A:GLU166 4.6 19.8 1.0
N A:HIS198 4.9 21.1 1.0
CB A:PRO167 4.9 19.6 1.0

Reference:

J.Jeyakanthan, S.P.Kanaujia, Z.A.Rafi, K.Sekar, N.Nakagawa, A.Ebihara, S.Kuramitsu, A.Shinkai, Y.Shiro, S.Yokoyama. Crystal Structure of Abc Transporter with Complex (AQ_297) From Aquifex Aeolicus VF5 To Be Published.
Page generated: Wed Aug 14 02:06:34 2024

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