Magnesium in PDB 2pn3: Crystal Structure of Hepatitis C Virus Ires Subdomain Iia

The structure of Crystal Structure of Hepatitis C Virus Ires Subdomain Iia, PDB code: 2pn3 was solved by Q.Zhao, Q.Han, C.R.Kissinger, T.Hermann, P.A.Thompson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.00 / 2.90
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	48.945, 48.945, 120.942, 90.00, 90.00, 90.00
R / Rfree (%)	22.9 / 28.3

The structure of Crystal Structure of Hepatitis C Virus Ires Subdomain Iia also contains other interesting chemical elements:

Bromine

(Br)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Hepatitis C Virus Ires Subdomain Iia (pdb code 2pn3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Hepatitis C Virus Ires Subdomain Iia, PDB code: 2pn3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Hepatitis C Virus Ires Subdomain Iia


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Hepatitis C Virus Ires Subdomain Iia within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1 b:46.6 occ:1.00 O2 A:C55 2.6 36.7 1.0 C2 A:C55 3.6 36.9 1.0 N7 B:A109 3.6 18.3 1.0 N1 A:A54 4.0 27.3 1.0 C2 A:A54 4.1 27.3 1.0 N3 A:C55 4.1 37.1 1.0 C8 B:A109 4.3 18.7 1.0 N7 B:G110 4.4 19.2 1.0 O6 B:G110 4.5 20.2 1.0 C5 B:A109 4.6 16.4 1.0 N6 B:A109 4.7 17.7 1.0 N1 A:C55 4.7 35.2 1.0 OP2 B:A109 4.9 31.5 1.0 C1' A:C55 5.0 35.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Hepatitis C Virus Ires Subdomain Iia


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Hepatitis C Virus Ires Subdomain Iia within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2 b:56.2 occ:1.00 O4 A:U61 2.3 34.4 1.0 O6 A:G60 3.0 30.2 1.0 O6 B:G107 3.2 39.1 1.0 C4 A:U61 3.3 33.2 1.0 C6 A:G60 3.9 30.4 1.0 N7 A:G60 3.9 29.2 1.0 N3 A:U61 3.9 32.3 1.0 C5 A:G60 4.2 28.9 1.0 C6 B:G107 4.4 39.0 1.0 C5 A:U61 4.4 33.9 1.0 O6 B:G105 4.5 62.1 1.0 N4 A:C62 4.6 45.3 1.0 O4 A:U59 4.7 25.1 1.0 N4 B:C108 4.8 28.4 1.0

Q.Zhao, Q.Han, C.R.Kissinger, T.Hermann, P.A.Thompson. Structure of Hepatitis C Virus Ires Subdomain Iia. Acta Crystallogr.,Sect.D V. 64 436 2008.
ISSN: ISSN 0907-4449
PubMed: 18391410
DOI: 10.1107/S0907444908002011