Atomistry » Magnesium » PDB 2ppq-2q0e » 2pps
Atomistry »
  Magnesium »
    PDB 2ppq-2q0e »
      2pps »

Magnesium in PDB 2pps: Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only

Protein crystallography data

The structure of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only, PDB code: 2pps was solved by N.Krauss, W.-D.Schubert, O.Klukas, P.Fromme, H.T.Witt, W.Saenger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 4.00
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 286.000, 286.000, 167.000, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Other elements in 2pps:

The structure of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 89;

Binding sites:

The binding sites of Magnesium atom in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only (pdb code 2pps). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 89 binding sites of Magnesium where determined in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only, PDB code: 2pps:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 89 in 2pps

Go back to Magnesium Binding Sites List in 2pps
Magnesium binding site 1 out of 89 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2001

b:20.0
occ:1.00
MG A:CLA2001 0.0 20.0 1.0
NC A:CLA2001 2.0 20.0 1.0
ND A:CLA2001 2.0 20.0 1.0
NA A:CLA2001 2.1 20.0 1.0
NB A:CLA2001 2.2 20.0 1.0
C1C A:CLA2001 2.9 20.0 1.0
C4C A:CLA2001 3.0 20.0 1.0
C4D A:CLA2001 3.0 20.0 1.0
C1D A:CLA2001 3.0 20.0 1.0
C1A A:CLA2001 3.1 20.0 1.0
C4A A:CLA2001 3.1 20.0 1.0
C1B A:CLA2001 3.1 20.0 1.0
C4B A:CLA2001 3.2 20.0 1.0
CHA A:CLA2001 3.4 20.0 1.0
CHD A:CLA2001 3.4 20.0 1.0
CHC A:CLA2001 3.4 20.0 1.0
CHB A:CLA2001 3.4 20.0 1.0
C2C A:CLA2001 4.1 20.0 1.0
C3C A:CLA2001 4.2 20.0 1.0
C2D A:CLA2001 4.3 20.0 1.0
C3D A:CLA2001 4.3 20.0 1.0
C2A A:CLA2001 4.3 20.0 1.0
C3A A:CLA2001 4.3 20.0 1.0
C2B A:CLA2001 4.5 20.0 1.0
C3B A:CLA2001 4.5 20.0 1.0
C2A B:CLA2002 4.5 20.0 1.0
CHA B:CLA2002 4.6 20.0 1.0
C1A B:CLA2002 4.7 20.0 1.0

Magnesium binding site 2 out of 89 in 2pps

Go back to Magnesium Binding Sites List in 2pps
Magnesium binding site 2 out of 89 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2002

b:20.0
occ:1.00
MG B:CLA2002 0.0 20.0 1.0
NC B:CLA2002 2.0 20.0 1.0
ND B:CLA2002 2.1 20.0 1.0
NA B:CLA2002 2.1 20.0 1.0
NB B:CLA2002 2.2 20.0 1.0
C1C B:CLA2002 2.9 20.0 1.0
C4C B:CLA2002 3.0 20.0 1.0
C4D B:CLA2002 3.1 20.0 1.0
C1D B:CLA2002 3.1 20.0 1.0
C1A B:CLA2002 3.1 20.0 1.0
C4A B:CLA2002 3.1 20.0 1.0
C1B B:CLA2002 3.1 20.0 1.0
C4B B:CLA2002 3.1 20.0 1.0
CHC B:CLA2002 3.4 20.0 1.0
CHD B:CLA2002 3.4 20.0 1.0
CHB B:CLA2002 3.4 20.0 1.0
CHA B:CLA2002 3.4 20.0 1.0
C2C B:CLA2002 4.1 20.0 1.0
C3C B:CLA2002 4.2 20.0 1.0
CHA A:CLA2001 4.3 20.0 1.0
C2D B:CLA2002 4.3 20.0 1.0
C3D B:CLA2002 4.3 20.0 1.0
C2A B:CLA2002 4.3 20.0 1.0
C3A B:CLA2002 4.3 20.0 1.0
C2B B:CLA2002 4.5 20.0 1.0
C3B B:CLA2002 4.5 20.0 1.0
C1A A:CLA2001 4.8 20.0 1.0
C2A A:CLA2001 4.9 20.0 1.0
C4D A:CLA2001 4.9 20.0 1.0
C3D A:CLA2001 5.0 20.0 1.0

Magnesium binding site 3 out of 89 in 2pps

Go back to Magnesium Binding Sites List in 2pps
Magnesium binding site 3 out of 89 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2003

b:20.0
occ:1.00
MG B:CLA2003 0.0 20.0 1.0
NC B:CLA2003 2.0 20.0 1.0
ND B:CLA2003 2.0 20.0 1.0
NA B:CLA2003 2.1 20.0 1.0
NB B:CLA2003 2.2 20.0 1.0
C1C B:CLA2003 2.9 20.0 1.0
C4D B:CLA2003 3.0 20.0 1.0
C1D B:CLA2003 3.0 20.0 1.0
C4C B:CLA2003 3.0 20.0 1.0
C1A B:CLA2003 3.1 20.0 1.0
C4A B:CLA2003 3.1 20.0 1.0
C1B B:CLA2003 3.1 20.0 1.0
C4B B:CLA2003 3.2 20.0 1.0
CHA B:CLA2003 3.4 20.0 1.0
CHD B:CLA2003 3.4 20.0 1.0
CHB B:CLA2003 3.4 20.0 1.0
CHC B:CLA2003 3.4 20.0 1.0
C2C B:CLA2003 4.1 20.0 1.0
C3C B:CLA2003 4.2 20.0 1.0
C2D B:CLA2003 4.3 20.0 1.0
C3D B:CLA2003 4.3 20.0 1.0
C2A B:CLA2003 4.3 20.0 1.0
C3A B:CLA2003 4.3 20.0 1.0
C2B B:CLA2003 4.5 20.0 1.0
C3B B:CLA2003 4.5 20.0 1.0

Magnesium binding site 4 out of 89 in 2pps

Go back to Magnesium Binding Sites List in 2pps
Magnesium binding site 4 out of 89 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2004

b:20.0
occ:1.00
MG B:CLA2004 0.0 20.0 1.0
NC B:CLA2004 2.0 20.0 1.0
ND B:CLA2004 2.0 20.0 1.0
NA B:CLA2004 2.1 20.0 1.0
NB B:CLA2004 2.2 20.0 1.0
C1C B:CLA2004 2.9 20.0 1.0
C4D B:CLA2004 3.0 20.0 1.0
C4C B:CLA2004 3.0 20.0 1.0
C1A B:CLA2004 3.1 20.0 1.0
C1D B:CLA2004 3.1 20.0 1.0
C4A B:CLA2004 3.1 20.0 1.0
C1B B:CLA2004 3.1 20.0 1.0
C4B B:CLA2004 3.2 20.0 1.0
CHA B:CLA2004 3.4 20.0 1.0
CHD B:CLA2004 3.4 20.0 1.0
CHB B:CLA2004 3.4 20.0 1.0
CHC B:CLA2004 3.4 20.0 1.0
C2C B:CLA2004 4.2 20.0 1.0
C3C B:CLA2004 4.2 20.0 1.0
C3D B:CLA2004 4.3 20.0 1.0
C2D B:CLA2004 4.3 20.0 1.0
C2A B:CLA2004 4.3 20.0 1.0
C3A B:CLA2004 4.3 20.0 1.0
C2B B:CLA2004 4.5 20.0 1.0
C3B B:CLA2004 4.5 20.0 1.0

Magnesium binding site 5 out of 89 in 2pps

Go back to Magnesium Binding Sites List in 2pps
Magnesium binding site 5 out of 89 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2005

b:20.0
occ:1.00
MG B:CLA2005 0.0 20.0 1.0
NA B:CLA2005 2.0 20.0 1.0
NC B:CLA2005 2.0 20.0 1.0
ND B:CLA2005 2.1 20.0 1.0
NB B:CLA2005 2.2 20.0 1.0
C1C B:CLA2005 3.0 20.0 1.0
C1A B:CLA2005 3.0 20.0 1.0
C4A B:CLA2005 3.1 20.0 1.0
C4D B:CLA2005 3.1 20.0 1.0
C1B B:CLA2005 3.1 20.0 1.0
C1D B:CLA2005 3.1 20.0 1.0
C4C B:CLA2005 3.1 20.0 1.0
C4B B:CLA2005 3.2 20.0 1.0
CHB B:CLA2005 3.4 20.0 1.0
CHA B:CLA2005 3.4 20.0 1.0
CHC B:CLA2005 3.5 20.0 1.0
CHD B:CLA2005 3.5 20.0 1.0
C2C B:CLA2005 4.2 20.0 1.0
C2A B:CLA2005 4.3 20.0 1.0
C3A B:CLA2005 4.3 20.0 1.0
C3C B:CLA2005 4.3 20.0 1.0
C3D B:CLA2005 4.3 20.0 1.0
C2D B:CLA2005 4.4 20.0 1.0
C2B B:CLA2005 4.4 20.0 1.0
C3B B:CLA2005 4.5 20.0 1.0

Magnesium binding site 6 out of 89 in 2pps

Go back to Magnesium Binding Sites List in 2pps
Magnesium binding site 6 out of 89 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2006

b:20.0
occ:1.00
MG A:CLA2006 0.0 20.0 1.0
NA A:CLA2006 2.0 20.0 1.0
NC A:CLA2006 2.0 20.0 1.0
ND A:CLA2006 2.1 20.0 1.0
NB A:CLA2006 2.2 20.0 1.0
C1C A:CLA2006 3.0 20.0 1.0
C1A A:CLA2006 3.0 20.0 1.0
C4A A:CLA2006 3.1 20.0 1.0
C4D A:CLA2006 3.1 20.0 1.0
C1B A:CLA2006 3.1 20.0 1.0
C1D A:CLA2006 3.1 20.0 1.0
C4C A:CLA2006 3.1 20.0 1.0
C4B A:CLA2006 3.2 20.0 1.0
CHB A:CLA2006 3.4 20.0 1.0
CHA A:CLA2006 3.4 20.0 1.0
CHC A:CLA2006 3.5 20.0 1.0
CHD A:CLA2006 3.5 20.0 1.0
C2C A:CLA2006 4.2 20.0 1.0
C2A A:CLA2006 4.3 20.0 1.0
C3A A:CLA2006 4.3 20.0 1.0
C3C A:CLA2006 4.3 20.0 1.0
C3D A:CLA2006 4.3 20.0 1.0
C2D A:CLA2006 4.4 20.0 1.0
C2B A:CLA2006 4.4 20.0 1.0
C3B A:CLA2006 4.5 20.0 1.0

Magnesium binding site 7 out of 89 in 2pps

Go back to Magnesium Binding Sites List in 2pps
Magnesium binding site 7 out of 89 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2501

b:20.0
occ:1.00
MG B:CLA2501 0.0 20.0 1.0
NC B:CLA2501 2.0 20.0 1.0
NA B:CLA2501 2.0 20.0 1.0
ND B:CLA2501 2.1 20.0 1.0
NB B:CLA2501 2.2 20.0 1.0
C1C B:CLA2501 3.0 20.0 1.0
C1A B:CLA2501 3.0 20.0 1.0
C4A B:CLA2501 3.1 20.0 1.0
C4D B:CLA2501 3.1 20.0 1.0
C1B B:CLA2501 3.1 20.0 1.0
C1D B:CLA2501 3.1 20.0 1.0
C4C B:CLA2501 3.1 20.0 1.0
C4B B:CLA2501 3.2 20.0 1.0
CHB B:CLA2501 3.4 20.0 1.0
CHA B:CLA2501 3.4 20.0 1.0
CHC B:CLA2501 3.5 20.0 1.0
CHD B:CLA2501 3.5 20.0 1.0
C2C B:CLA2501 4.2 20.0 1.0
C2A B:CLA2501 4.3 20.0 1.0
C3A B:CLA2501 4.3 20.0 1.0
C3C B:CLA2501 4.3 20.0 1.0
C3D B:CLA2501 4.3 20.0 1.0
C2D B:CLA2501 4.3 20.0 1.0
C2B B:CLA2501 4.4 20.0 1.0
C3B B:CLA2501 4.5 20.0 1.0

Magnesium binding site 8 out of 89 in 2pps

Go back to Magnesium Binding Sites List in 2pps
Magnesium binding site 8 out of 89 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2502

b:20.0
occ:1.00
MG A:CLA2502 0.0 20.0 1.0
NA A:CLA2502 2.0 20.0 1.0
NC A:CLA2502 2.0 20.0 1.0
ND A:CLA2502 2.1 20.0 1.0
NB A:CLA2502 2.2 20.0 1.0
C1C A:CLA2502 3.0 20.0 1.0
C1A A:CLA2502 3.0 20.0 1.0
C4A A:CLA2502 3.1 20.0 1.0
C4D A:CLA2502 3.1 20.0 1.0
C1B A:CLA2502 3.1 20.0 1.0
C1D A:CLA2502 3.1 20.0 1.0
C4C A:CLA2502 3.1 20.0 1.0
C4B A:CLA2502 3.2 20.0 1.0
CHB A:CLA2502 3.4 20.0 1.0
CHA A:CLA2502 3.4 20.0 1.0
CHC A:CLA2502 3.5 20.0 1.0
CHD A:CLA2502 3.5 20.0 1.0
C2C A:CLA2502 4.2 20.0 1.0
C2A A:CLA2502 4.3 20.0 1.0
C3A A:CLA2502 4.3 20.0 1.0
C3C A:CLA2502 4.3 20.0 1.0
C3D A:CLA2502 4.3 20.0 1.0
C2D A:CLA2502 4.3 20.0 1.0
C2B A:CLA2502 4.4 20.0 1.0
C3B A:CLA2502 4.5 20.0 1.0

Magnesium binding site 9 out of 89 in 2pps

Go back to Magnesium Binding Sites List in 2pps
Magnesium binding site 9 out of 89 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg3001

b:20.0
occ:1.00
MG B:CLA3001 0.0 20.0 1.0
NA B:CLA3001 2.0 20.0 1.0
NC B:CLA3001 2.0 20.0 1.0
ND B:CLA3001 2.1 20.0 1.0
NB B:CLA3001 2.2 20.0 1.0
C1C B:CLA3001 3.0 20.0 1.0
C1A B:CLA3001 3.0 20.0 1.0
C4A B:CLA3001 3.1 20.0 1.0
C4D B:CLA3001 3.1 20.0 1.0
C1B B:CLA3001 3.1 20.0 1.0
C1D B:CLA3001 3.1 20.0 1.0
C4C B:CLA3001 3.1 20.0 1.0
C4B B:CLA3001 3.2 20.0 1.0
CHB B:CLA3001 3.4 20.0 1.0
CHA B:CLA3001 3.4 20.0 1.0
CHC B:CLA3001 3.5 20.0 1.0
CHD B:CLA3001 3.5 20.0 1.0
C2C B:CLA3001 4.2 20.0 1.0
C2A B:CLA3001 4.3 20.0 1.0
C3A B:CLA3001 4.3 20.0 1.0
C3C B:CLA3001 4.3 20.0 1.0
C3D B:CLA3001 4.3 20.0 1.0
C2D B:CLA3001 4.3 20.0 1.0
C2B B:CLA3001 4.4 20.0 1.0
C3B B:CLA3001 4.5 20.0 1.0

Magnesium binding site 10 out of 89 in 2pps

Go back to Magnesium Binding Sites List in 2pps
Magnesium binding site 10 out of 89 in the Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Photosynthetic Reaction Center and Core Antenna System (Trimeric), Alpha Carbon Only within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg3002

b:20.0
occ:1.00
MG F:CLA3002 0.0 20.0 1.0
NA F:CLA3002 2.0 20.0 1.0
NC F:CLA3002 2.0 20.0 1.0
ND F:CLA3002 2.1 20.0 1.0
NB F:CLA3002 2.2 20.0 1.0
C1C F:CLA3002 3.0 20.0 1.0
C1A F:CLA3002 3.0 20.0 1.0
C4A F:CLA3002 3.1 20.0 1.0
C4D F:CLA3002 3.1 20.0 1.0
C1B F:CLA3002 3.1 20.0 1.0
C1D F:CLA3002 3.1 20.0 1.0
C4C F:CLA3002 3.1 20.0 1.0
C4B F:CLA3002 3.2 20.0 1.0
CHB F:CLA3002 3.4 20.0 1.0
CHA F:CLA3002 3.4 20.0 1.0
CHC F:CLA3002 3.5 20.0 1.0
CHD F:CLA3002 3.5 20.0 1.0
C2C F:CLA3002 4.2 20.0 1.0
C2A F:CLA3002 4.3 20.0 1.0
C3A F:CLA3002 4.3 20.0 1.0
C3C F:CLA3002 4.3 20.0 1.0
C3D F:CLA3002 4.3 20.0 1.0
C2D F:CLA3002 4.4 20.0 1.0
C2B F:CLA3002 4.4 20.0 1.0
C3B F:CLA3002 4.5 20.0 1.0

Reference:

N.Krauss, W.D.Schubert, O.Klukas, P.Fromme, H.T.Witt, W.Saenger. Photosystem I at 4 A Resolution Represents the First Structural Model of A Joint Photosynthetic Reaction Centre and Core Antenna System. Nat.Struct.Biol. V. 3 965 1996.
ISSN: ISSN 1072-8368
PubMed: 8901876
DOI: 10.1038/NSB1196-965
Page generated: Mon Dec 14 07:34:57 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy