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Magnesium in PDB 2psn: Crystal Structure of ENOLASE1

Enzymatic activity of Crystal Structure of ENOLASE1

All present enzymatic activity of Crystal Structure of ENOLASE1:
4.2.1.11;

Protein crystallography data

The structure of Crystal Structure of ENOLASE1, PDB code: 2psn was solved by J.K.Hyo, J.K.Seung, J.C.Sang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.20
Space group P 42
Cell size a, b, c (Å), α, β, γ (°) 192.796, 192.796, 65.170, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 21.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of ENOLASE1 (pdb code 2psn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Crystal Structure of ENOLASE1, PDB code: 2psn:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 2psn

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Magnesium binding site 1 out of 8 in the Crystal Structure of ENOLASE1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of ENOLASE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:18.3
occ:1.00
O A:HOH889 2.2 7.7 1.0
OD2 A:ASP317 2.2 7.0 1.0
O A:HOH712 2.3 7.6 1.0
OE2 A:GLU292 2.3 15.4 1.0
OD2 A:ASP244 2.3 12.8 1.0
MG A:MG702 3.1 18.7 1.0
CG A:ASP244 3.2 16.7 1.0
CG A:ASP317 3.4 15.7 1.0
OD1 A:ASP244 3.5 13.4 1.0
CD A:GLU292 3.5 10.0 1.0
NZ A:LYS342 3.5 9.4 1.0
O A:HOH711 3.6 7.6 1.0
OE1 A:GLN165 3.7 16.7 1.0
O A:HOH710 3.7 10.0 1.0
NZ A:LYS393 3.8 7.0 1.0
CB A:ASP317 4.0 8.1 1.0
O1 A:PO4709 4.1 9.4 1.0
OE1 A:GLU292 4.2 9.5 1.0
CD2 A:LEU340 4.3 8.4 1.0
OD2 A:ASP293 4.3 12.2 1.0
OD1 A:ASP317 4.3 14.1 1.0
O2 A:PO4709 4.4 11.1 1.0
CG A:GLU292 4.5 6.9 1.0
OE2 A:GLU166 4.5 14.1 1.0
CB A:ASP244 4.6 10.0 1.0
CE A:LYS342 4.7 11.6 1.0
CD A:GLN165 4.7 13.5 1.0
OG A:SER39 4.8 11.3 1.0
O A:HOH736 4.9 12.7 1.0
CE A:LYS393 4.9 7.6 1.0
CB A:ALA246 4.9 11.7 1.0
P A:PO4709 4.9 12.5 1.0

Magnesium binding site 2 out of 8 in 2psn

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Magnesium binding site 2 out of 8 in the Crystal Structure of ENOLASE1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of ENOLASE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg702

b:18.7
occ:1.00
O A:HOH710 2.2 10.0 1.0
O A:HOH711 2.3 7.6 1.0
O2 A:PO4709 2.3 11.1 1.0
OG A:SER39 2.4 11.3 1.0
O A:SER39 2.4 18.9 1.0
MG A:MG701 3.1 18.3 1.0
CB A:SER39 3.3 13.9 1.0
P A:PO4709 3.3 12.5 1.0
C A:SER39 3.4 14.7 1.0
O1 A:PO4709 3.4 9.4 1.0
OD2 A:ASP317 3.5 7.0 1.0
NZ A:LYS342 3.7 9.4 1.0
O A:HOH712 3.8 7.6 1.0
CA A:SER39 3.8 11.9 1.0
OE1 A:GLN165 3.9 16.7 1.0
O3 A:PO4709 4.0 12.3 1.0
NE2 A:GLN165 4.1 8.7 1.0
O A:HOH889 4.1 7.7 1.0
OD2 A:ASP318 4.2 11.3 1.0
OD1 A:ASP318 4.2 11.3 1.0
N A:SER39 4.3 10.2 1.0
NH2 A:ARG371 4.4 6.9 1.0
CD A:GLN165 4.5 13.5 1.0
O4 A:PO4709 4.5 9.9 1.0
CG A:ASP318 4.6 12.6 1.0
N A:THR40 4.6 17.1 1.0
CG A:ASP317 4.7 15.7 1.0
OD2 A:ASP244 4.8 12.8 1.0
CB A:ALA246 4.9 11.7 1.0

Magnesium binding site 3 out of 8 in 2psn

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Magnesium binding site 3 out of 8 in the Crystal Structure of ENOLASE1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of ENOLASE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg703

b:22.3
occ:1.00
O B:HOH712 2.1 14.4 1.0
OD2 B:ASP317 2.2 14.5 1.0
O B:HOH711 2.3 14.1 1.0
OE2 B:GLU292 2.3 27.9 1.0
OD2 B:ASP244 2.4 20.8 1.0
MG B:MG704 2.9 22.9 1.0
CG B:ASP244 3.3 20.4 1.0
CG B:ASP317 3.3 16.7 1.0
OD1 B:ASP244 3.5 20.8 1.0
CD B:GLU292 3.5 22.1 1.0
NZ B:LYS342 3.5 12.9 1.0
OE1 B:GLN165 3.6 17.0 1.0
O B:HOH713 3.7 13.8 1.0
NZ B:LYS393 3.8 10.6 1.0
O B:HOH718 3.9 15.7 1.0
O1 B:PO4710 4.0 16.9 1.0
CB B:ASP317 4.0 13.3 1.0
OE1 B:GLU292 4.1 17.8 1.0
OD1 B:ASP317 4.3 17.0 1.0
CD2 B:LEU340 4.3 12.0 1.0
O2 B:PO4710 4.4 15.4 1.0
OE2 B:GLU166 4.4 18.6 1.0
OD2 B:ASP293 4.4 22.3 1.0
CG B:GLU292 4.5 20.1 1.0
CB B:ASP244 4.7 16.4 1.0
CD B:GLN165 4.7 14.7 1.0
CE B:LYS342 4.7 12.5 1.0
OG B:SER39 4.8 11.1 1.0
P B:PO4710 4.8 16.4 1.0
O B:HOH722 4.9 16.5 1.0
CB B:ALA246 5.0 14.8 1.0

Magnesium binding site 4 out of 8 in 2psn

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Magnesium binding site 4 out of 8 in the Crystal Structure of ENOLASE1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of ENOLASE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg704

b:22.9
occ:1.00
O B:HOH718 2.3 15.7 1.0
O2 B:PO4710 2.3 15.4 1.0
O B:HOH713 2.3 13.8 1.0
OG B:SER39 2.4 11.1 1.0
O B:SER39 2.4 20.8 1.0
MG B:MG703 2.9 22.3 1.0
O1 B:PO4710 3.1 16.9 1.0
P B:PO4710 3.2 16.4 1.0
CB B:SER39 3.4 14.3 1.0
OD2 B:ASP317 3.4 14.5 1.0
C B:SER39 3.4 18.3 1.0
NZ B:LYS342 3.6 12.9 1.0
O B:HOH711 3.7 14.1 1.0
O3 B:PO4710 3.8 17.1 1.0
OE1 B:GLN165 3.8 17.0 1.0
CA B:SER39 3.9 15.7 1.0
O B:HOH712 4.0 14.4 1.0
NE2 B:GLN165 4.0 7.6 1.0
OD1 B:ASP318 4.3 15.9 1.0
N B:SER39 4.3 17.2 1.0
CD B:GLN165 4.3 14.7 1.0
OD2 B:ASP318 4.4 17.5 1.0
NH2 B:ARG371 4.4 12.2 1.0
O4 B:PO4710 4.5 14.8 1.0
CG B:ASP317 4.6 16.7 1.0
N B:THR40 4.6 18.4 1.0
CG B:ASP318 4.7 21.0 1.0
OD2 B:ASP244 4.7 20.8 1.0
CB B:ALA246 4.9 14.8 1.0

Magnesium binding site 5 out of 8 in 2psn

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Magnesium binding site 5 out of 8 in the Crystal Structure of ENOLASE1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of ENOLASE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg705

b:29.3
occ:1.00
O C:HOH831 2.2 16.4 1.0
OD2 C:ASP317 2.3 18.2 1.0
OD2 C:ASP244 2.3 23.0 1.0
O C:HOH712 2.4 22.4 1.0
OE2 C:GLU292 2.7 24.5 1.0
MG C:MG706 2.7 25.6 1.0
CG C:ASP244 3.3 23.4 1.0
OE1 C:GLN165 3.3 26.1 1.0
NZ C:LYS342 3.5 18.8 1.0
CG C:ASP317 3.5 19.0 1.0
O C:HOH732 3.6 16.5 1.0
OD1 C:ASP244 3.6 22.4 1.0
O1 C:PO4711 3.8 12.6 1.0
CD C:GLU292 3.8 15.6 1.0
NZ C:LYS393 4.0 11.6 1.0
O2 C:PO4711 4.1 15.3 1.0
CB C:ASP317 4.3 14.8 1.0
CD C:GLN165 4.4 21.2 1.0
OD1 C:ASP317 4.4 13.7 1.0
OG C:SER39 4.4 16.0 1.0
OE2 C:GLU166 4.5 21.2 1.0
OE1 C:GLU292 4.5 20.9 1.0
OD2 C:ASP293 4.6 16.9 1.0
P C:PO4711 4.6 17.9 1.0
CE C:LYS342 4.6 21.0 1.0
CD2 C:LEU340 4.7 10.4 1.0
CB C:ASP244 4.7 17.0 1.0
NE2 C:GLN165 4.7 16.9 1.0
CB C:ALA246 4.7 23.8 1.0
CG C:GLU292 4.8 13.0 1.0
O C:HOH725 4.9 23.0 1.0

Magnesium binding site 6 out of 8 in 2psn

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Magnesium binding site 6 out of 8 in the Crystal Structure of ENOLASE1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of ENOLASE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg706

b:25.6
occ:1.00
O C:HOH732 2.3 16.5 1.0
O2 C:PO4711 2.4 15.3 1.0
OG C:SER39 2.4 16.0 1.0
O C:SER39 2.5 24.6 1.0
MG C:MG705 2.7 29.3 1.0
CB C:SER39 3.3 18.0 1.0
P C:PO4711 3.3 17.9 1.0
O1 C:PO4711 3.4 12.6 1.0
C C:SER39 3.5 21.4 1.0
OD2 C:ASP317 3.5 18.2 1.0
NZ C:LYS342 3.7 18.8 1.0
O C:HOH712 3.8 22.4 1.0
CA C:SER39 3.9 19.3 1.0
O3 C:PO4711 3.9 17.9 1.0
OE1 C:GLN165 4.0 26.1 1.0
NE2 C:GLN165 4.0 16.9 1.0
OD2 C:ASP318 4.1 22.9 1.0
O C:HOH831 4.1 16.4 1.0
N C:SER39 4.4 19.2 1.0
OD1 C:ASP318 4.4 18.3 1.0
NH2 C:ARG371 4.4 13.8 1.0
CD C:GLN165 4.5 21.2 1.0
CG C:ASP317 4.6 19.0 1.0
CG C:ASP318 4.6 23.2 1.0
O4 C:PO4711 4.6 16.0 1.0
N C:THR40 4.6 20.9 1.0
OD2 C:ASP244 4.8 23.0 1.0
CB C:ALA246 4.9 23.8 1.0
OD1 C:ASP317 5.0 13.7 1.0

Magnesium binding site 7 out of 8 in 2psn

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Magnesium binding site 7 out of 8 in the Crystal Structure of ENOLASE1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of ENOLASE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg707

b:32.1
occ:1.00
OD2 D:ASP317 2.3 16.1 1.0
O D:HOH800 2.3 21.5 1.0
O D:HOH721 2.3 22.8 1.0
OD2 D:ASP244 2.4 25.0 1.0
MG D:MG708 2.6 30.1 1.0
OE2 D:GLU292 2.6 38.0 1.0
CG D:ASP244 3.3 31.6 1.0
O D:HOH801 3.4 25.4 1.0
OE1 D:GLN165 3.4 23.4 1.0
CG D:ASP317 3.5 21.1 1.0
O D:HOH757 3.5 18.9 1.0
OD1 D:ASP244 3.5 27.1 1.0
NZ D:LYS342 3.6 9.8 1.0
CD D:GLU292 3.8 32.7 1.0
O1 D:PO4712 3.9 21.1 1.0
NZ D:LYS393 4.1 13.4 1.0
CB D:ASP317 4.3 21.1 1.0
O2 D:PO4712 4.3 20.2 1.0
OG D:SER39 4.3 18.9 1.0
OD1 D:ASP317 4.4 20.5 1.0
OE1 D:GLU292 4.5 33.3 1.0
CD D:GLN165 4.5 21.6 1.0
OD2 D:ASP293 4.5 27.7 1.0
CD2 D:LEU340 4.6 17.8 1.0
OE2 D:GLU166 4.6 26.1 1.0
CB D:ALA246 4.7 27.1 1.0
CB D:ASP244 4.8 25.4 1.0
P D:PO4712 4.8 23.6 1.0
CE D:LYS342 4.8 12.0 1.0
CG D:GLU292 4.8 31.6 1.0
NE2 D:GLN165 4.8 14.9 1.0
O D:HOH714 4.9 16.7 1.0

Magnesium binding site 8 out of 8 in 2psn

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Magnesium binding site 8 out of 8 in the Crystal Structure of ENOLASE1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of ENOLASE1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg708

b:30.1
occ:1.00
OG D:SER39 2.3 18.9 1.0
O D:HOH801 2.3 25.4 1.0
O D:HOH757 2.3 18.9 1.0
O2 D:PO4712 2.5 20.2 1.0
O D:SER39 2.5 29.2 1.0
MG D:MG707 2.6 32.1 1.0
O1 D:PO4712 3.2 21.1 1.0
P D:PO4712 3.3 23.6 1.0
CB D:SER39 3.4 23.2 1.0
C D:SER39 3.5 24.1 1.0
OD2 D:ASP317 3.5 16.1 1.0
NZ D:LYS342 3.7 9.8 1.0
O D:HOH721 3.7 22.8 1.0
OE1 D:GLN165 3.8 23.4 1.0
O D:HOH800 3.8 21.5 1.0
O3 D:PO4712 3.9 18.3 1.0
CA D:SER39 4.0 23.5 1.0
NE2 D:GLN165 4.0 14.9 1.0
OD2 D:ASP318 4.2 27.1 1.0
OD1 D:ASP318 4.3 22.5 1.0
CD D:GLN165 4.4 21.6 1.0
N D:SER39 4.4 23.6 1.0
NH2 D:ARG371 4.4 11.9 1.0
CG D:ASP318 4.6 26.0 1.0
O4 D:PO4712 4.6 24.7 1.0
CG D:ASP317 4.6 21.1 1.0
OD2 D:ASP244 4.7 25.0 1.0
N D:THR40 4.7 23.4 1.0
CB D:ALA246 4.9 27.1 1.0

Reference:

J.K.Hyo, J.K.Seung, J.C.Sang, J.Suk-Kyeong. Crystal Structure of ENOLASE1 Alpha To Be Published.
Page generated: Wed Aug 14 02:17:29 2024

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