Magnesium in PDB 2q4o: Ensemble Refinement of the Crystal Structure of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene AT2G37210

The structure of Ensemble Refinement of the Crystal Structure of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene AT2G37210, PDB code: 2q4o was solved by E.J.Levin, D.A.Kondrashov, G.E.Wesenberg, G.N.Phillips Jr., Center Foreukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.96 / 1.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.403, 66.773, 98.639, 90.00, 90.00, 90.00
R / Rfree (%)	16.8 / 22.4

The binding sites of Magnesium atom in the Ensemble Refinement of the Crystal Structure of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene AT2G37210 (pdb code 2q4o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ensemble Refinement of the Crystal Structure of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene AT2G37210, PDB code: 2q4o:

Magnesium binding site 1 out of 1 in the Ensemble Refinement of the Crystal Structure of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene AT2G37210


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ensemble Refinement of the Crystal Structure of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene AT2G37210 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg700 b:33.0 occ:0.12 O B:HOH814 2.1 24.7 0.1 OD2 B:ASP139 2.2 24.1 0.1 O B:HOH762 2.3 30.7 0.1 O B:HOH812 2.3 29.1 0.1 O B:HOH813 2.5 32.4 0.1 O B:ASP139 2.5 21.1 0.1 CG B:ASP139 3.3 25.9 0.1 C B:ASP139 3.7 22.3 0.1 OD1 B:ASP139 4.0 26.7 0.1 O B:HOH756 4.1 45.0 0.1 CB B:ASP139 4.1 24.9 0.1 CG B:PRO141 4.1 21.5 0.1 O B:HOH704 4.2 20.4 0.1 CD B:PRO141 4.3 19.2 0.1 N B:PRO141 4.4 18.5 0.1 O B:HOH717 4.4 22.0 0.1 CA B:ASP139 4.5 22.2 0.1 C B:LYS140 4.5 19.4 0.1 O B:HOH750 4.5 39.5 0.1 N B:LYS140 4.7 19.0 0.1 CA B:LYS140 4.7 19.1 0.1 CA B:PRO141 4.9 19.8 0.1

E.J.Levin, D.A.Kondrashov, G.E.Wesenberg, G.N.Phillips. Ensemble Refinement of Protein Crystal Structures: Validation and Application. Structure V. 15 1040 2007.
ISSN: ISSN 0969-2126
PubMed: 17850744
DOI: 10.1016/J.STR.2007.06.019