Magnesium in PDB 2q73: Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212)

All present enzymatic activity of Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212):
3.6.1.19;

The structure of Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212), PDB code: 2q73 was solved by A.Robinson, A.P.Guilfoyle, S.J.Harrop, Y.Boucher, H.W.Stokes, P.M.G.Curmi, B.C.Mabbutt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.84 / 1.80
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	87.963, 87.963, 158.976, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 22.7

The binding sites of Magnesium atom in the Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212) (pdb code 2q73). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212), PDB code: 2q73:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:23.0 occ:0.50 OE1 A:GLU33 2.3 38.7 1.0 OE1 A:GLU30 2.3 34.4 1.0 OE1 A:GLU58 2.4 33.9 1.0 OD2 A:ASP61 2.5 33.3 1.0 O A:HOH531 2.5 36.3 1.0 O A:HOH511 2.8 32.5 1.0 CD A:GLU30 3.4 35.3 1.0 CD A:GLU58 3.4 32.4 1.0 CD A:GLU33 3.5 36.4 1.0 CG A:ASP61 3.5 30.6 1.0 O A:HOH509 3.6 36.9 1.0 OE2 A:GLU58 3.6 35.6 1.0 OE2 A:GLU30 3.8 39.8 1.0 O A:HOH526 3.9 47.8 1.0 CB A:ASP61 3.9 29.4 1.0 CB A:GLU33 4.2 26.7 1.0 O A:HOH518 4.2 44.2 1.0 OE2 A:GLU33 4.3 42.3 1.0 CG A:GLU33 4.4 29.1 1.0 OD1 A:ASP61 4.6 29.4 1.0 OE1 A:GLU57 4.6 42.3 1.0 CG A:GLU30 4.7 29.2 1.0 O A:HOH554 4.7 56.2 1.0 CG A:GLU58 4.8 26.4 1.0 CG A:GLU57 4.8 32.6 1.0 O A:HOH529 4.9 30.5 1.0 CA A:GLU58 4.9 26.1 1.0 CB A:GLU30 4.9 28.8 1.0 CA A:GLU30 5.0 28.4 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:25.0 occ:0.50 OE1 B:GLU33 2.3 41.6 1.0 OE1 B:GLU30 2.3 32.4 1.0 OE1 B:GLU58 2.3 33.5 1.0 O B:HOH529 2.3 39.6 1.0 O B:HOH521 2.5 48.7 1.0 OD2 B:ASP61 2.7 30.6 1.0 CD B:GLU58 3.4 33.9 1.0 CD B:GLU30 3.4 33.5 1.0 O B:HOH530 3.5 39.6 1.0 CD B:GLU33 3.5 39.5 1.0 CG B:ASP61 3.7 29.0 1.0 OE2 B:GLU58 3.8 35.6 1.0 OE2 B:GLU30 3.8 37.3 1.0 CB B:GLU33 4.1 27.9 1.0 CB B:ASP61 4.1 27.8 1.0 CG B:GLU33 4.3 29.9 1.0 OE1 B:GLU57 4.4 40.0 1.0 OE2 B:GLU33 4.4 44.4 1.0 CG B:GLU30 4.7 28.1 1.0 CG B:GLU58 4.7 27.8 1.0 CG B:GLU57 4.8 31.7 1.0 OD1 B:ASP61 4.8 27.9 1.0 CD B:GLU57 4.9 37.8 1.0 CA B:GLU58 4.9 26.4 1.0 CB B:GLU30 5.0 27.5 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg503 b:21.6 occ:0.50 OE1 C:GLU30 2.3 33.8 1.0 OE1 C:GLU33 2.3 38.0 1.0 O C:HOH510 2.4 45.8 1.0 OE1 C:GLU58 2.4 33.9 1.0 OD2 C:ASP61 2.5 30.8 1.0 O C:HOH522 2.6 47.1 1.0 CD C:GLU30 3.3 33.7 1.0 CD C:GLU58 3.5 32.5 1.0 CD C:GLU33 3.5 32.2 1.0 CG C:ASP61 3.6 30.0 1.0 O C:HOH538 3.6 36.3 1.0 OE2 C:GLU30 3.7 38.6 1.0 OE2 C:GLU58 3.8 33.9 1.0 CB C:ASP61 4.0 28.6 1.0 CB C:GLU33 4.3 25.4 1.0 OE2 C:GLU33 4.4 39.0 1.0 CG C:GLU33 4.5 26.9 1.0 CG C:GLU57 4.6 31.1 1.0 OD1 C:ASP61 4.6 31.0 1.0 OE1 C:GLU57 4.7 41.2 1.0 CG C:GLU30 4.7 29.2 1.0 CG C:GLU58 4.8 28.0 1.0 CD C:GLU57 4.9 37.5 1.0 CA C:GLU58 4.9 26.5 1.0 O C:HOH536 5.0 52.1 1.0 O C:HOH533 5.0 33.0 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Imazg From Vibrio Dat 722: Ctag-Imazg (P41212) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg504 b:26.1 occ:0.50 O D:HOH536 2.3 37.1 1.0 OE1 D:GLU33 2.4 42.0 1.0 OE1 D:GLU30 2.4 31.1 1.0 OE1 D:GLU58 2.5 32.8 1.0 O D:HOH519 2.6 44.7 1.0 OD2 D:ASP61 2.6 33.2 1.0 CD D:GLU30 3.4 30.7 1.0 O D:HOH523 3.5 38.3 1.0 CD D:GLU58 3.5 33.5 1.0 CD D:GLU33 3.6 38.9 1.0 CG D:ASP61 3.7 29.5 1.0 OE2 D:GLU30 3.8 36.4 1.0 OE2 D:GLU58 3.9 36.9 1.0 CB D:ASP61 4.1 28.1 1.0 O D:HOH537 4.1 54.6 1.0 CB D:GLU33 4.2 26.4 1.0 OE1 D:GLU57 4.3 40.1 1.0 O D:HOH538 4.3 38.8 1.0 CG D:GLU33 4.5 30.1 1.0 OE2 D:GLU33 4.5 43.2 1.0 O D:HOH525 4.6 38.4 1.0 CG D:GLU30 4.7 27.6 1.0 OD1 D:ASP61 4.7 31.8 1.0 CD D:GLU57 4.9 37.7 1.0 CG D:GLU58 4.9 28.4 1.0 CA D:GLU58 4.9 26.7 1.0 CB D:GLU30 5.0 27.6 1.0 CG D:GLU57 5.0 31.6 1.0

A.Robinson, A.P.Guilfoyle, S.J.Harrop, Y.Boucher, H.W.Stokes, P.M.Curmi, B.C.Mabbutt. A Putative House-Cleaning Enzyme Encoded Within An Integron Array: 1.8 A Crystal Structure Defines A New Mazg Subtype. Mol.Microbiol. V. 66 610 2007.
ISSN: ISSN 0950-382X
PubMed: 17892463
DOI: 10.1111/J.1365-2958.2007.05932.X