Magnesium in PDB 2qdf: Structure of N-Terminal Domain of E. Coli Yaet

The structure of Structure of N-Terminal Domain of E. Coli Yaet, PDB code: 2qdf was solved by S.Kim, J.C.Malinverni, P.Sliz, T.J.Silhavy, S.C.Harrison, D.Kahne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.20
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.650, 107.560, 44.220, 90.00, 90.00, 90.00
R / Rfree (%)	23.8 / 28.6

The binding sites of Magnesium atom in the Structure of N-Terminal Domain of E. Coli Yaet (pdb code 2qdf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of N-Terminal Domain of E. Coli Yaet, PDB code: 2qdf:

Magnesium binding site 1 out of 1 in the Structure of N-Terminal Domain of E. Coli Yaet


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of N-Terminal Domain of E. Coli Yaet within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg500 b:43.8 occ:1.00 O A:PHE99 2.4 37.1 1.0 ND2 A:ASN102 2.5 28.3 1.0 O A:HOH504 2.5 43.0 1.0 O A:HOH529 2.6 50.5 1.0 OD1 A:ASP107 2.7 32.6 1.0 C A:PHE99 3.4 34.5 1.0 CG A:ASN102 3.5 36.7 1.0 CG A:ASP107 3.5 39.1 1.0 OD2 A:ASP107 3.7 36.6 1.0 OD1 A:ASN102 3.7 39.1 1.0 CA A:SER100 4.0 35.1 1.0 N A:SER100 4.1 36.3 1.0 O A:ASN102 4.1 39.7 1.0 CB A:PHE99 4.3 31.9 1.0 CA A:PHE99 4.4 35.2 1.0 N A:GLY101 4.5 37.1 1.0 N A:ASN102 4.6 36.1 1.0 C A:SER100 4.7 35.5 1.0 CB A:ASN102 4.8 35.1 1.0 O A:HOH515 4.8 32.0 1.0 C A:ASN102 4.9 39.1 1.0 N A:PHE99 5.0 31.6 1.0 CB A:ASP107 5.0 39.4 1.0

S.Kim, J.C.Malinverni, P.Sliz, T.J.Silhavy, S.C.Harrison, D.Kahne. Structure and Function of An Essential Component of the Outer Membrane Protein Assembly Machine. Science V. 317 961 2007.
ISSN: ISSN 0036-8075
PubMed: 17702946
DOI: 10.1126/SCIENCE.1143993