Magnesium in PDB 2qgy: Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea

The structure of Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea, PDB code: 2qgy was solved by J.B.Bonanno, M.Gilmore, K.T.Bain, C.Lau, R.Romero, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	88.636, 139.168, 121.153, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 22.2

The binding sites of Magnesium atom in the Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea (pdb code 2qgy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea, PDB code: 2qgy:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:19.9 occ:1.00 OE1 A:GLU250 1.9 24.4 1.0 OD2 A:ASP198 2.0 19.8 1.0 O A:HOH956 2.0 22.4 1.0 OE2 A:GLU224 2.0 21.6 1.0 O A:HOH968 2.1 26.8 1.0 O A:HOH971 2.1 22.1 1.0 CD A:GLU250 2.9 21.3 1.0 CG A:ASP198 3.0 18.1 1.0 CD A:GLU224 3.1 20.6 1.0 OE2 A:GLU250 3.2 24.7 1.0 OD1 A:ASP198 3.4 18.1 1.0 CG A:GLU224 3.7 18.3 1.0 OH A:TYR169 4.0 22.4 1.0 NZ A:LYS167 4.1 18.1 1.0 OE1 A:GLU224 4.1 21.8 1.0 CG A:GLU250 4.2 19.3 1.0 OE1 A:GLU225 4.3 24.3 1.0 ND2 A:ASN271 4.3 14.8 1.0 CB A:ASP198 4.3 17.4 1.0 CD2 A:HIS300 4.4 18.7 1.0 O A:HOH886 4.4 38.1 1.0 O A:HOH796 4.4 32.1 1.0 O A:HOH881 4.6 42.2 1.0 NE2 A:HIS300 4.6 20.2 1.0 CG A:GLU225 4.7 18.8 1.0 CZ A:TYR169 4.7 20.4 1.0 CE A:LYS167 4.7 19.1 1.0 CE1 A:TYR169 4.7 20.5 1.0 O A:HOH757 4.8 23.9 1.0 CB A:GLU224 4.9 18.0 1.0 CD A:GLU225 4.9 21.9 1.0 CB A:GLU250 5.0 18.0 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:16.5 occ:1.00 OE1 B:GLU250 2.0 20.7 1.0 OD2 B:ASP198 2.0 16.2 1.0 O B:HOH981 2.0 18.8 1.0 O B:HOH994 2.1 26.0 1.0 OE2 B:GLU224 2.1 21.5 1.0 O B:HOH758 2.1 25.1 1.0 CD B:GLU250 3.0 20.7 1.0 CG B:ASP198 3.0 14.9 1.0 CD B:GLU224 3.2 18.6 1.0 OD1 B:ASP198 3.4 15.5 1.0 OE2 B:GLU250 3.4 22.8 1.0 CG B:GLU224 3.7 17.9 1.0 OH B:TYR169 4.0 20.0 1.0 NZ B:LYS167 4.1 17.0 1.0 OE1 B:GLU224 4.2 20.4 1.0 CG B:GLU250 4.2 17.4 1.0 OE1 B:GLU225 4.3 20.2 1.0 ND2 B:ASN271 4.3 14.7 1.0 CB B:ASP198 4.3 14.4 1.0 CD2 B:HIS300 4.4 19.6 1.0 O B:HOH763 4.4 27.4 1.0 NE2 B:HIS300 4.6 18.8 1.0 O B:HOH791 4.6 32.6 1.0 CE B:LYS167 4.6 17.7 1.0 O B:HOH749 4.7 21.6 1.0 CZ B:TYR169 4.8 18.3 1.0 CG B:GLU225 4.8 16.9 1.0 CE1 B:TYR169 4.9 18.5 1.0 CB B:GLU224 4.9 16.8 1.0 CD B:GLU225 5.0 18.4 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg703 b:27.1 occ:0.50 OD1 B:ASN265 1.8 25.3 1.0 O B:HOH745 2.1 23.5 0.5 O B:HOH765 2.2 21.0 1.0 CG B:ASN265 3.0 16.7 1.0 O B:HOH801 3.1 19.4 0.5 ND2 B:ASN265 3.8 25.2 1.0 CB B:ASN265 4.1 17.4 1.0 O B:HOH904 4.1 39.6 1.0 O B:ILE262 4.2 17.8 1.0 CA B:ASN265 4.5 15.7 1.0 O B:ASN293 4.6 23.1 1.0 OD1 B:ASN293 4.9 23.4 1.0 N B:ASN265 5.0 15.6 1.0

J.B.Bonanno, M.Gilmore, K.T.Bain, C.Lau, R.Romero, D.Smith, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of An Enolase From the Environmental Genome Shotgun Sequencing of the Sargasso Sea. To Be Published.