Magnesium in PDB 2qjl: Crystal Structure of URM1

The structure of Crystal Structure of URM1, PDB code: 2qjl was solved by J.Yu, C.Z.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.44
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	50.384, 63.009, 28.893, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 19.8

The binding sites of Magnesium atom in the Crystal Structure of URM1 (pdb code 2qjl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of URM1, PDB code: 2qjl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of URM1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of URM1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:11.3 occ:1.00 O A:HOH2158 2.0 14.2 1.0 O A:HOH2114 2.1 10.3 1.0 O A:HOH2102 2.1 9.5 1.0 O A:HOH2058 2.1 18.1 1.0 O A:HOH2079 2.1 12.2 1.0 O A:HOH2085 2.2 14.4 1.0 O A:HOH2166 4.1 31.6 1.0 OD2 A:ASP71 4.3 11.8 1.0 O A:HOH2131 4.4 23.6 1.0 O A:HOH2149 4.7 25.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of URM1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of URM1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:22.3 occ:1.00 O A:HOH2165 2.0 19.4 1.0 O A:HOH2109 2.1 22.1 1.0 O A:HOH2162 2.1 22.4 1.0 O A:HOH2154 2.1 27.9 1.0 O A:HOH2221 2.1 26.9 1.0 O A:HOH2170 2.2 24.5 1.0 OE1 A:GLU85 4.0 17.4 1.0 O A:HOH2237 4.1 35.6 1.0 O A:HOH2025 4.2 14.7 1.0 O A:HOH2060 4.3 14.8 1.0 O A:HOH2206 4.4 34.7 1.0 O A:HOH2233 4.6 45.5 1.0 CD A:GLU85 4.8 16.0 1.0 OE2 A:GLU85 4.9 18.2 1.0

J.Yu, C.Z.Zhou. Crystal Structure of the Dimeric URM1 From the Yeast Saccharomyces Cerevisiae. Proteins V. 71 1050 2008.
ISSN: ISSN 0887-3585
PubMed: 18260097
DOI: 10.1002/PROT.21975