Magnesium in PDB 2qmq: Crystal Structure of A N-Myc Downstream Regulated 2 Protein (NDRG2, Syld, NDR2, AI182517, AU040374) From Mus Musculus at 1.70 A Resolution

The structure of Crystal Structure of A N-Myc Downstream Regulated 2 Protein (NDRG2, Syld, NDR2, AI182517, AU040374) From Mus Musculus at 1.70 A Resolution, PDB code: 2qmq was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.35 / 1.70
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	46.371, 46.371, 214.749, 90.00, 90.00, 120.00
R / Rfree (%)	14.5 / 18.3

The binding sites of Magnesium atom in the Crystal Structure of A N-Myc Downstream Regulated 2 Protein (NDRG2, Syld, NDR2, AI182517, AU040374) From Mus Musculus at 1.70 A Resolution (pdb code 2qmq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A N-Myc Downstream Regulated 2 Protein (NDRG2, Syld, NDR2, AI182517, AU040374) From Mus Musculus at 1.70 A Resolution, PDB code: 2qmq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A N-Myc Downstream Regulated 2 Protein (NDRG2, Syld, NDR2, AI182517, AU040374) From Mus Musculus at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A N-Myc Downstream Regulated 2 Protein (NDRG2, Syld, NDR2, AI182517, AU040374) From Mus Musculus at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1 b:21.2 occ:1.00 O A:HOH397 1.9 25.6 1.0 O A:HOH377 2.0 23.0 1.0 O A:HOH385 2.0 24.5 1.0 O A:HOH344 2.1 18.6 1.0 O A:HOH358 2.1 20.9 1.0 O A:HOH392 2.2 25.1 1.0 O A:HOH495 4.0 37.9 1.0 OD1 A:ASP161 4.1 19.5 1.0 ND1 A:HIS159 4.2 15.0 1.0 OD2 A:ASP161 4.3 20.1 1.0 O A:HOH467 4.4 35.1 1.0 O A:ASN158 4.4 14.4 1.0 CG A:ASP161 4.5 16.7 1.0 CE1 A:HIS159 4.8 19.2 1.0 CA A:HIS159 4.9 13.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A N-Myc Downstream Regulated 2 Protein (NDRG2, Syld, NDR2, AI182517, AU040374) From Mus Musculus at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A N-Myc Downstream Regulated 2 Protein (NDRG2, Syld, NDR2, AI182517, AU040374) From Mus Musculus at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2 b:33.0 occ:1.00 O A:HOH441 2.1 32.5 1.0 O A:HOH418 2.1 28.0 1.0 OD1 A:ASN244 2.1 21.8 1.0 O A:HOH486 2.1 36.5 1.0 O A:HOH429 2.2 28.8 1.0 O A:HOH421 2.3 29.6 1.0 CG A:ASN244 3.2 21.7 1.0 ND2 A:ASN244 4.0 26.4 1.0 O A:HOH442 4.1 32.5 1.0 O A:HOH388 4.1 24.4 1.0 CB A:ASN244 4.2 19.8 1.0 OD2 A:ASP242 4.4 18.4 1.0 O A:HOH445 4.4 32.1 1.0 O A:GLU246 4.6 17.7 1.0 CA A:ASN244 4.7 19.2 1.0 CG A:ASP242 5.0 16.8 1.0

J.Hwang, Y.Kim, H.B.Kang, L.Jaroszewski, A.M.Deacon, H.Lee, W.C.Choi, K.J.Kim, C.H.Kim, B.S.Kang, J.O.Lee, T.K.Oh, J.W.Kim, I.A.Wilson, M.H.Kim. Crystal Structure of the Human N-Myc Downstream-Regulated Gene 2 Protein Provides Insight Into Its Role As A Tumor Suppressor. J.Biol.Chem. V. 286 12450 2011.
ISSN: ISSN 0021-9258
PubMed: 21247902
DOI: 10.1074/JBC.M110.170803