Magnesium in PDB 2qsy: Human Nicotinamide Riboside Kinase 1 in Complex with Adp

The structure of Human Nicotinamide Riboside Kinase 1 in Complex with Adp, PDB code: 2qsy was solved by W.M.Rabeh, W.Tempel, L.Nedyalkova, R.Landry, C.H.Arrowsmith, A.M.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, C.Brenner, H.Park, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.51 / 1.95
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	54.453, 142.070, 62.263, 90.00, 90.00, 90.00
R / Rfree (%)	21.9 / 26.3

The binding sites of Magnesium atom in the Human Nicotinamide Riboside Kinase 1 in Complex with Adp (pdb code 2qsy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human Nicotinamide Riboside Kinase 1 in Complex with Adp, PDB code: 2qsy:

Magnesium binding site 1 out of 1 in the Human Nicotinamide Riboside Kinase 1 in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Nicotinamide Riboside Kinase 1 in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1102 b:32.2 occ:1.00 O A:HOH1110 2.0 21.0 1.0 O A:HOH1108 2.1 25.5 1.0 O A:HOH1173 2.2 29.9 1.0 O2B A:ADP1101 2.3 16.6 1.0 OG1 A:THR17 2.3 17.3 1.0 O A:HOH1109 2.3 22.3 1.0 PB A:ADP1101 3.3 17.8 1.0 O3B A:ADP1101 3.4 17.9 1.0 CB A:THR17 3.4 14.8 1.0 OD2 A:ASP36 4.1 41.7 1.0 OE1 A:GLU98 4.1 20.2 1.0 O1A A:ADP1101 4.1 19.4 1.0 O A:HOH1154 4.2 26.1 1.0 N A:THR17 4.2 15.4 1.0 OE2 A:GLU98 4.2 19.5 1.0 O A:HOH1124 4.4 30.2 1.0 O3A A:ADP1101 4.4 16.0 1.0 CA A:THR17 4.4 13.8 1.0 CG A:ASP36 4.4 36.5 1.0 O1B A:ADP1101 4.4 14.1 1.0 CG2 A:THR17 4.4 17.8 1.0 CD A:GLU98 4.6 21.7 1.0 O A:HOH1125 4.6 18.4 1.0 NH2 A:ARG132 4.7 48.2 1.0 PA A:ADP1101 4.7 18.8 1.0 OD1 A:ASP36 4.7 39.0 1.0 OG A:SER34 4.9 22.1 1.0 CE A:LYS16 4.9 12.7 1.0 NZ A:LYS16 5.0 14.4 1.0

W.Tempel, W.M.Rabeh, K.L.Bogan, P.Belenky, M.Wojcik, H.F.Seidle, L.Nedyalkova, T.Yang, A.A.Sauve, H.W.Park, C.Brenner. Nicotinamide Riboside Kinase Structures Reveal New Pathways to Nad(+). Plos Biol. V. 5 E263 2007.
ISSN: ISSN 1544-9173
PubMed: 17914902
DOI: 10.1371/JOURNAL.PBIO.0050263