Magnesium in PDB 2qty: Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3)

All present enzymatic activity of Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3):
3.2.1.143;

The structure of Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3), PDB code: 2qty was solved by C.Mueller-Dieckmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	53.877, 60.096, 91.782, 90.00, 90.09, 90.00
R / Rfree (%)	16.7 / 19.8

The binding sites of Magnesium atom in the Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3) (pdb code 2qty). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3), PDB code: 2qty:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg348 b:8.2 occ:1.00 O A:HOH359 2.0 11.7 1.0 OD1 A:ASP61 2.0 15.8 1.0 OD2 A:ASP300 2.0 20.1 1.0 OD2 A:ASP62 2.0 15.4 1.0 O A:HOH382 2.1 12.6 1.0 OG1 A:THR60 2.3 13.9 1.0 CG A:ASP61 3.1 19.4 1.0 CG A:ASP300 3.2 18.9 1.0 CG A:ASP62 3.2 14.2 1.0 CB A:THR60 3.3 16.5 1.0 OD2 A:ASP61 3.6 19.9 1.0 MG A:MG349 3.7 12.9 1.0 N A:ASP62 3.9 13.3 1.0 OD1 A:ASP300 3.9 18.0 1.0 N A:ASP61 3.9 14.4 1.0 OD1 A:ASP62 3.9 15.3 1.0 OD1 A:ASP18 4.0 16.9 1.0 OE1 A:GLU25 4.1 21.7 1.0 CG2 A:THR60 4.1 10.4 1.0 OE2 A:GLU25 4.2 21.4 1.0 O A:HOH393 4.2 26.2 1.0 O A:GLY99 4.3 19.6 1.0 OG1 A:THR301 4.3 17.1 1.0 CB A:ASP62 4.3 14.0 1.0 CB A:ASP61 4.3 14.6 1.0 CB A:ASP300 4.3 15.9 1.0 CD A:GLU25 4.4 20.9 1.0 C A:THR60 4.5 16.1 1.0 CA A:THR60 4.5 15.2 1.0 CA A:ASP61 4.5 14.8 1.0 C A:ASP61 4.6 14.6 1.0 CA A:ASP62 4.7 13.5 1.0 CG A:ASP18 5.0 16.1 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg349 b:12.9 occ:1.00 OD1 A:ASP298 2.2 19.4 1.0 OD1 A:ASP300 2.2 18.0 1.0 O A:HOH382 2.2 12.6 1.0 OE2 A:GLU25 2.2 21.4 1.0 O A:HOH371 2.2 10.7 1.0 OG1 A:THR301 2.3 17.1 1.0 CG A:ASP300 3.0 18.9 1.0 CG A:ASP298 3.1 17.1 1.0 CD A:GLU25 3.2 20.9 1.0 OD2 A:ASP300 3.2 20.1 1.0 CB A:THR301 3.4 17.8 1.0 OD2 A:ASP298 3.4 18.5 1.0 N A:THR301 3.7 16.8 1.0 MG A:MG348 3.7 8.2 1.0 CG A:GLU25 3.9 17.3 1.0 O A:HOH393 3.9 26.2 1.0 OE1 A:GLU25 4.0 21.7 1.0 CA A:THR301 4.1 16.8 1.0 OD2 A:ASP62 4.3 15.4 1.0 O A:HOH359 4.3 11.7 1.0 CB A:ASP300 4.4 15.9 1.0 OD1 A:ASP62 4.4 15.3 1.0 CB A:ASP298 4.5 14.1 1.0 C A:ASP300 4.6 16.6 1.0 CG2 A:THR301 4.6 17.6 1.0 N A:ASP300 4.6 16.0 1.0 CA A:ASP300 4.7 15.9 1.0 CA A:ASP298 4.8 15.0 1.0 CG A:ASP62 4.8 14.2 1.0 C A:ASP298 4.8 16.1 1.0 O A:ASP298 4.8 15.2 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg348 b:15.6 occ:1.00 OD2 B:ASP300 2.0 19.9 1.0 OD1 B:ASP61 2.0 17.8 1.0 OD2 B:ASP62 2.0 16.9 1.0 O B:HOH371 2.1 13.1 1.0 OG1 B:THR60 2.1 15.2 1.0 O B:HOH367 2.2 14.3 1.0 CG B:ASP61 3.1 17.0 1.0 CG B:ASP300 3.2 20.6 1.0 CB B:THR60 3.2 15.0 1.0 CG B:ASP62 3.2 16.4 1.0 OD2 B:ASP61 3.7 18.6 1.0 MG B:MG349 3.7 14.0 1.0 OD1 B:ASP300 3.7 16.4 1.0 N B:ASP62 3.9 14.6 1.0 N B:ASP61 3.9 14.9 1.0 OD1 B:ASP62 4.0 16.4 1.0 O B:HOH419 4.0 22.6 1.0 OD1 B:ASP18 4.0 14.4 1.0 CG2 B:THR60 4.0 15.3 1.0 OE1 B:GLU25 4.1 20.9 1.0 OE2 B:GLU25 4.2 20.0 1.0 O B:GLY99 4.2 17.5 1.0 OG1 B:THR301 4.2 15.9 1.0 CB B:ASP62 4.3 14.8 1.0 CB B:ASP300 4.3 15.7 1.0 CB B:ASP61 4.4 15.2 1.0 CD B:GLU25 4.4 19.4 1.0 CA B:THR60 4.4 14.9 1.0 C B:THR60 4.5 14.8 1.0 CA B:ASP61 4.5 14.8 1.0 CA B:ASP62 4.7 15.2 1.0 C B:ASP61 4.7 14.4 1.0 CG B:ASP18 5.0 16.7 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg349 b:14.0 occ:1.00 OD1 B:ASP298 2.1 18.4 1.0 OE2 B:GLU25 2.2 20.0 1.0 OD1 B:ASP300 2.2 16.4 1.0 O B:HOH367 2.2 14.3 1.0 O B:HOH423 2.2 15.0 1.0 OG1 B:THR301 2.2 15.9 1.0 CG B:ASP300 3.1 20.6 1.0 CD B:GLU25 3.1 19.4 1.0 CG B:ASP298 3.1 15.9 1.0 OD2 B:ASP300 3.3 19.9 1.0 CB B:THR301 3.4 15.9 1.0 OD2 B:ASP298 3.4 18.2 1.0 MG B:MG348 3.7 15.6 1.0 O B:HOH419 3.7 22.6 1.0 CG B:GLU25 3.8 17.4 1.0 N B:THR301 3.8 16.3 1.0 OE1 B:GLU25 3.9 20.9 1.0 CA B:THR301 4.2 15.7 1.0 OD2 B:ASP62 4.2 16.9 1.0 OD1 B:ASP62 4.3 16.4 1.0 O B:HOH371 4.4 13.1 1.0 CB B:ASP298 4.4 13.9 1.0 CB B:ASP300 4.5 15.7 1.0 CG2 B:THR301 4.5 16.1 1.0 C B:ASP300 4.7 17.0 1.0 CA B:ASP298 4.7 15.5 1.0 CG B:ASP62 4.7 16.4 1.0 C B:ASP298 4.7 15.5 1.0 O B:ASP298 4.8 16.5 1.0 N B:ASP300 4.8 15.3 1.0 CA B:ASP300 4.8 16.5 1.0

C.Mueller-Dieckmann, S.Kernstock, J.Mueller-Dieckmann, M.S.Weiss, F.Koch-Nolte. Structure of Mouse Adp-Ribosylhydrolase 3 (MARH3). Acta Crystallogr.,Sect.F V. 64 156 2008.
ISSN: ESSN 1744-3091
PubMed: 18323597
DOI: 10.1107/S1744309108001413