Magnesium in PDB 2qvh: Crystal Structure of O-Succinylbenzoate Synthase Complexed with O- Succinyl Benzoate (Osb)

The structure of Crystal Structure of O-Succinylbenzoate Synthase Complexed with O- Succinyl Benzoate (Osb), PDB code: 2qvh was solved by R.Sugadev, S.K.Burley, S.Swaminathan, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.25 / 1.76
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	44.543, 52.877, 61.449, 70.53, 87.22, 85.56
R / Rfree (%)	21.8 / 25.1

The binding sites of Magnesium atom in the Crystal Structure of O-Succinylbenzoate Synthase Complexed with O- Succinyl Benzoate (Osb) (pdb code 2qvh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of O-Succinylbenzoate Synthase Complexed with O- Succinyl Benzoate (Osb), PDB code: 2qvh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of O-Succinylbenzoate Synthase Complexed with O- Succinyl Benzoate (Osb)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of O-Succinylbenzoate Synthase Complexed with O- Succinyl Benzoate (Osb) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:13.5 occ:1.00 OE2 A:GLU156 2.0 12.1 1.0 O A:HOH5658 2.0 11.5 1.0 O1 A:OSB5550 2.1 14.4 1.0 OD2 A:ASP179 2.1 13.6 1.0 OD1 A:ASP130 2.2 12.9 1.0 O2 A:OSB5550 2.3 13.1 1.0 C7 A:OSB5550 2.6 12.7 1.0 CD A:GLU156 3.0 13.9 1.0 CG A:ASP130 3.1 11.7 1.0 CG A:ASP179 3.2 13.2 1.0 OD2 A:ASP130 3.4 10.6 1.0 CB A:ASP179 3.6 12.4 1.0 CG A:GLU156 3.6 11.1 1.0 OE1 A:GLU156 3.9 16.3 1.0 C2 A:OSB5550 4.0 15.4 1.0 O A:HOH5583 4.1 15.8 1.0 ND2 A:ASN132 4.1 15.9 1.0 OE1 A:GLU180 4.2 12.9 1.0 CE A:LYS97 4.2 27.1 1.0 OD1 A:ASP179 4.3 13.6 1.0 NZ A:LYS97 4.4 26.6 1.0 NH2 A:ARG183 4.4 12.0 1.0 CB A:ASP130 4.5 9.2 1.0 CB A:GLU156 4.6 9.8 1.0 CE A:LYS203 4.6 9.9 1.0 NZ A:LYS203 4.7 12.5 1.0 C3 A:OSB5550 4.7 16.9 1.0 O A:HOH5648 4.8 25.3 1.0 OE2 A:GLU180 4.8 14.0 1.0 O3 A:OSB5550 4.9 16.1 1.0 CD A:GLU180 4.9 14.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of O-Succinylbenzoate Synthase Complexed with O- Succinyl Benzoate (Osb)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of O-Succinylbenzoate Synthase Complexed with O- Succinyl Benzoate (Osb) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg400 b:10.4 occ:1.00 O B:HOH5552 2.0 10.9 1.0 OE2 B:GLU156 2.0 10.5 1.0 OD2 B:ASP179 2.0 7.2 1.0 O1 B:OSB5551 2.2 10.6 1.0 O2 B:OSB5551 2.3 11.1 1.0 OD2 B:ASP130 2.3 12.8 1.0 C7 B:OSB5551 2.6 11.5 1.0 CG B:ASP179 3.1 7.9 1.0 CD B:GLU156 3.1 13.3 1.0 CG B:ASP130 3.2 11.3 1.0 OD1 B:ASP130 3.4 6.8 1.0 CB B:ASP179 3.5 9.4 1.0 CG B:GLU156 3.7 10.8 1.0 OE1 B:GLU180 3.9 15.0 1.0 NZ B:LYS97 3.9 23.6 1.0 O B:HOH5587 4.0 18.4 1.0 C2 B:OSB5551 4.0 13.2 1.0 ND2 B:ASN132 4.1 13.1 1.0 OE1 B:GLU156 4.1 14.2 1.0 OD1 B:ASP179 4.2 8.7 1.0 NH2 B:ARG183 4.3 9.8 1.0 CE B:LYS203 4.5 13.9 1.0 CB B:ASP130 4.6 11.0 1.0 CB B:GLU156 4.7 11.0 1.0 C3 B:OSB5551 4.8 15.7 1.0 CD B:GLU180 4.8 15.1 1.0 NZ B:LYS203 4.8 15.3 1.0 OE2 B:GLU180 4.8 16.2 1.0 O3 B:OSB5551 4.8 15.9 1.0 CA B:ASP179 5.0 10.9 1.0

R.Sugadev, S.K.Burley, S.Swaminathan. Crystal Structure of O-Succinylbenzoate Synthase Complexed with O-Succinyl Benzoate. To Be Published.