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Magnesium in PDB 2r3b: Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution, PDB code: 2r3b was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.59 / 1.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 97.817, 159.564, 102.497, 90.00, 90.00, 90.00
R / Rfree (%) 15 / 18.3

Other elements in 2r3b:

The structure of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution (pdb code 2r3b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution, PDB code: 2r3b:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 2r3b

Go back to Magnesium Binding Sites List in 2r3b
Magnesium binding site 1 out of 2 in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg292

b:51.7
occ:1.00
O A:HOH554 2.1 51.7 1.0
O A:HOH405 2.1 33.1 1.0
O A:HOH547 2.1 51.2 1.0
O A:HOH515 2.1 47.3 1.0
O A:HOH551 2.3 49.5 1.0
OE2 A:GLU91 4.0 53.2 1.0
O A:HOH470 4.1 42.4 1.0
O A:GLU91 4.1 22.0 1.0
O A:HOH532 4.2 49.7 1.0
OE1 A:GLU91 4.2 44.2 1.0
CD A:GLU91 4.4 45.2 1.0
OE1 A:GLN120 4.5 32.7 1.0
O A:HOH373 4.5 57.5 1.0
CA A:GLN92 4.7 19.2 1.0
NE2 A:GLN122 4.7 44.1 1.0

Magnesium binding site 2 out of 2 in 2r3b

Go back to Magnesium Binding Sites List in 2r3b
Magnesium binding site 2 out of 2 in the Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Ribokinase-Like Superfamily Protein (EF1790) From Enterococcus Faecalis V583 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg292

b:40.1
occ:1.00
O B:HOH431 2.1 35.6 1.0
O B:HOH373 2.2 27.8 1.0
O B:HOH420 2.2 34.9 1.0
O B:HOH462 2.2 39.9 1.0
O B:HOH419 2.2 35.0 1.0
O B:HOH512 2.3 45.9 1.0
O B:GLU91 3.9 16.6 1.0
OE2 B:GLU91 4.1 35.9 1.0
O B:HOH383 4.2 29.1 1.0
O B:HOH397 4.2 30.6 1.0
O B:HOH494 4.3 43.3 1.0
O B:HOH526 4.3 47.8 1.0
OE1 B:GLU91 4.4 30.5 1.0
OE1 B:GLN120 4.5 23.8 1.0
CD B:GLU91 4.6 28.8 1.0
O B:HOH393 4.7 70.4 1.0
NE2 B:GLN122 4.8 35.7 1.0
CA B:GLN92 4.8 14.1 1.0
O B:HOH551 4.8 53.8 1.0
C B:GLU91 4.9 15.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Aug 14 03:16:20 2024

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