Magnesium in PDB 2rgd: Crystal Structure of H-RASQ61L-Gppnhp

The structure of Crystal Structure of H-RASQ61L-Gppnhp, PDB code: 2rgd was solved by G.Buhrman, G.Wink, C.Mattos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.45 / 2.00
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	88.953, 88.953, 134.022, 90.00, 90.00, 120.00
R / Rfree (%)	18.4 / 22

The structure of Crystal Structure of H-RASQ61L-Gppnhp also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Magnesium atom in the Crystal Structure of H-RASQ61L-Gppnhp (pdb code 2rgd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of H-RASQ61L-Gppnhp, PDB code: 2rgd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of H-RASQ61L-Gppnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of H-RASQ61L-Gppnhp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:13.1 occ:1.00 O A:HOH639 2.0 11.7 1.0 O2B A:GNP528 2.1 10.5 1.0 O A:HOH615 2.1 14.8 1.0 OG A:SER17 2.1 10.3 1.0 OG1 A:THR35 2.2 13.8 1.0 O2G A:GNP528 2.2 12.5 1.0 CB A:THR35 3.1 12.8 1.0 PB A:GNP528 3.2 12.3 1.0 PG A:GNP528 3.2 13.6 1.0 CB A:SER17 3.2 9.3 1.0 N3B A:GNP528 3.4 10.6 1.0 N A:SER17 3.8 9.1 1.0 N A:THR35 3.9 14.4 1.0 O3G A:GNP528 3.9 10.7 1.0 OD2 A:ASP57 3.9 18.2 1.0 CA A:SER17 4.1 10.1 1.0 OD1 A:ASP57 4.1 11.9 1.0 CA A:THR35 4.1 14.5 1.0 CG2 A:THR35 4.2 13.0 1.0 O2A A:GNP528 4.2 12.6 1.0 O1B A:GNP528 4.2 12.2 1.0 O3A A:GNP528 4.2 11.5 1.0 O A:HOH619 4.3 16.6 1.0 O1G A:GNP528 4.4 12.2 1.0 CG A:ASP57 4.4 14.5 1.0 O A:THR58 4.4 14.4 1.0 PA A:GNP528 4.5 13.5 1.0 O A:ASP33 4.5 12.3 1.0 O1A A:GNP528 4.6 11.9 1.0 CB A:LYS16 4.7 9.8 1.0 CE A:LYS16 4.8 11.8 1.0 C A:LYS16 4.9 10.8 1.0 C A:PRO34 4.9 15.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of H-RASQ61L-Gppnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of H-RASQ61L-Gppnhp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:18.0 occ:0.50 O A:HOH665 2.1 25.3 1.0 O A:HOH645 2.3 22.1 1.0 NE2 A:GLN129 4.0 24.6 1.0 O A:THR124 4.2 13.4 1.0 OE1 A:GLN129 4.4 20.9 1.0 O A:HOH658 4.5 22.1 1.0 CD A:GLN129 4.6 24.0 1.0 O A:HOH712 4.9 85.8 1.0

G.Buhrman, G.Wink, C.Mattos. Transformation Efficiency of RASQ61 Mutants Linked to Structural Features of the Switch Regions in the Presence of Raf. Structure V. 15 1618 2007.
ISSN: ISSN 0969-2126
PubMed: 18073111
DOI: 10.1016/J.STR.2007.10.011