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Magnesium in PDB 2ukd: Ump/Cmp Kinase From Slime Mold Complexed with Adp, Cmp

Enzymatic activity of Ump/Cmp Kinase From Slime Mold Complexed with Adp, Cmp

All present enzymatic activity of Ump/Cmp Kinase From Slime Mold Complexed with Adp, Cmp:
2.7.4.14;

Protein crystallography data

The structure of Ump/Cmp Kinase From Slime Mold Complexed with Adp, Cmp, PDB code: 2ukd was solved by I.Schlichting, J.Reinstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.00 / 2.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.700, 78.700, 100.100, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 23.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ump/Cmp Kinase From Slime Mold Complexed with Adp, Cmp (pdb code 2ukd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ump/Cmp Kinase From Slime Mold Complexed with Adp, Cmp, PDB code: 2ukd:

Magnesium binding site 1 out of 1 in 2ukd

Go back to Magnesium Binding Sites List in 2ukd
Magnesium binding site 1 out of 1 in the Ump/Cmp Kinase From Slime Mold Complexed with Adp, Cmp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ump/Cmp Kinase From Slime Mold Complexed with Adp, Cmp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg500

b:25.0
occ:1.00
O2B A:ADP195 2.3 19.8 1.0
O A:HOH501 2.3 17.1 1.0
O A:HOH215 2.3 22.2 1.0
O A:HOH227 2.3 18.0 1.0
O A:HOH198 2.4 15.3 1.0
O A:HOH220 2.4 21.7 1.0
PB A:ADP195 3.4 17.8 1.0
O3B A:ADP195 3.5 17.3 1.0
O1P A:C5P196 3.5 22.4 1.0
O A:HOH553 3.9 59.7 1.0
O2P A:C5P196 4.0 19.4 1.0
O A:HOH900 4.2 29.7 1.0
P A:C5P196 4.2 20.0 1.0
O2A A:ADP195 4.3 17.6 1.0
O A:HOH197 4.3 28.4 1.0
O3A A:ADP195 4.4 19.2 1.0
OG A:SER36 4.4 16.9 1.0
O1B A:ADP195 4.4 18.1 1.0
O3P A:C5P196 4.5 20.4 1.0
OD2 A:ASP89 4.5 16.7 1.0
OD1 A:ASP89 4.5 14.9 1.0
N A:GLY20 4.5 14.3 1.0
NH1 A:ARG131 4.5 43.2 1.0
CA A:GLY20 4.8 14.2 1.0
PA A:ADP195 4.9 18.5 1.0
O A:HOH208 4.9 16.6 1.0
CG A:ASP89 4.9 17.9 1.0
NZ A:LYS19 5.0 13.4 1.0

Reference:

I.Schlichting, J.Reinstein. Structures of Active Conformations of Ump Kinase From Dictyostelium Discoideum Suggest Phosphoryl Transfer Is Associative. Biochemistry V. 36 9290 1997.
ISSN: ISSN 0006-2960
PubMed: 9280438
DOI: 10.1021/BI970974C
Page generated: Mon Dec 14 07:38:47 2020

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