Magnesium in the structure of Ump/Cmp Kinase From Slime Mold Complexed With Adp, Cmp (pdb 2ukd)

The binding sites of Magnesium atom in the structure of Ump/Cmp Kinase From Slime Mold Complexed With Adp, Cmp (pdb code 2ukd). This binding sites where shown with 5.0 Angstroms radius around Magnesium atom. The 2ukd structure was solved by I.SCHLICHTING, J.REINSTEIN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 37.0-2.2 Space group P41212 a (A) 78.700 b (A) 78.700 c (A) 100.100 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.3 Rfree (%) 23.1 Magnesium Binding Sites: Magnesium binding site 1 out of 1 in 2ukd Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Magnesium in the PDB 2ukd. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Magnesium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys19, A: Gly20, A: Ser36, A: Asp89, A: Arg131, A: Adp195, A: C5p196, A: Hoh197, A: Hoh198, A: Hoh208, A: Hoh215, A: Hoh220, A: Hoh227, A: Hoh501, A: Hoh553, A: Hoh900, conact list: Atom Atom Distance (A) Mg NZ A:Lys19 4.96 Mg N A:Gly20 4.53 Mg CA A:Gly20 4.81 Mg OG A:Ser36 4.42 Mg OD2 A:Asp89 4.48 Mg OD1 A:Asp89 4.50 Mg CG A:Asp89 4.94 Mg NH1 A:Arg131 4.54 Mg O3B A:Adp195 3.49 Mg PA A:Adp195 4.87 Mg O2A A:Adp195 4.29 Mg O1B A:Adp195 4.45 Mg PB A:Adp195 3.42 Mg O2B A:Adp195 2.26 Mg O3A A:Adp195 4.39 Mg P A:C5p196 4.16 Mg O3P A:C5p196 4.46 Mg O1P A:C5p196 3.55 Mg O2P A:C5p196 4.01 Mg O A:Hoh197 4.34 Mg O A:Hoh198 2.35 Mg O A:Hoh208 4.91 Mg O A:Hoh215 2.30 Mg O A:Hoh220 2.39 Mg O A:Hoh227 2.30 Mg O A:Hoh501 2.28 Mg O A:Hoh553 3.92 Mg O A:Hoh900 4.16 interactive model: