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Magnesium in PDB 2uu7: Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)

Enzymatic activity of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)

All present enzymatic activity of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris):
6.3.1.2;

Protein crystallography data

The structure of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris), PDB code: 2uu7 was solved by W.W.Krajewski, T.A.Jones, S.L.Mowbray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.99 / 3.00
Space group C 2 2 21 1
Cell size a, b, c (Å), α, β, γ (°) 183.590, 485.602, 192.156, 90.00, 90.00, 90.00
R / Rfree (%) 21.3 / 23

Other elements in 2uu7:

The structure of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) also contains other interesting chemical elements:

Chlorine (Cl) 15 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) (pdb code 2uu7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 15 binding sites of Magnesium where determined in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris), PDB code: 2uu7:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 15 in 2uu7

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Magnesium binding site 1 out of 15 in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:29.7
occ:1.00
 OE1 A:GLU203 1.9 38.8 1.0
OE2 A:GLU196 2.3 36.1 1.0
OE1 A:GLU136 2.5 33.2 1.0
CD A:GLU203 2.9 34.3 1.0
OE2 A:GLU203 3.2 40.6 1.0
CD A:GLU196 3.5 33.9 1.0
CD A:GLU136 3.6 30.8 1.0
OE2 A:GLU134 3.8 54.8 1.0
OE1 A:GLU196 4.2 34.8 1.0
CG A:GLU203 4.3 33.4 1.0
CG A:GLU136 4.3 30.4 1.0
CG A:GLU196 4.4 29.4 1.0
OE2 A:GLU136 4.6 34.0 1.0
CE1 A:HIS253 4.7 34.4 1.0
ND1 A:HIS253 4.7 35.0 1.0
CB A:GLU203 4.9 30.6 1.0
CD A:GLU134 4.9 45.8 1.0
ND2 A:ASN194 5.0 28.9 1.0

Magnesium binding site 2 out of 15 in 2uu7

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Magnesium binding site 2 out of 15 in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:29.7
occ:1.00
 OE1 B:GLU203 1.9 38.9 1.0
OE2 B:GLU196 2.4 36.1 1.0
OE1 B:GLU136 2.4 33.2 1.0
CD B:GLU203 2.9 34.3 1.0
OE2 B:GLU203 3.2 40.6 1.0
CD B:GLU196 3.5 34.0 1.0
CD B:GLU136 3.5 30.8 1.0
OE2 B:GLU134 3.8 54.8 1.0
CG B:GLU136 4.2 30.2 1.0
OE1 B:GLU196 4.2 35.0 1.0
CG B:GLU203 4.2 33.4 1.0
CG B:GLU196 4.4 29.6 1.0
OE2 B:GLU136 4.5 33.9 1.0
CE1 B:HIS253 4.7 34.5 1.0
ND1 B:HIS253 4.7 34.9 1.0
CB B:GLU203 4.9 30.6 1.0
CD B:GLU134 4.9 45.8 1.0

Magnesium binding site 3 out of 15 in 2uu7

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Magnesium binding site 3 out of 15 in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:30.1
occ:1.00
 OE1 C:GLU203 2.0 38.9 1.0
OE2 C:GLU196 2.4 36.3 1.0
OE1 C:GLU136 2.6 33.6 1.0
CD C:GLU203 2.9 34.5 1.0
OE2 C:GLU203 3.2 40.9 1.0
CD C:GLU196 3.5 34.1 1.0
CD C:GLU136 3.7 31.0 1.0
OE2 C:GLU134 3.7 54.8 1.0
OE1 C:GLU196 4.2 35.0 1.0
CG C:GLU136 4.3 30.3 1.0
CG C:GLU203 4.3 33.5 1.0
CG C:GLU196 4.5 29.5 1.0
OE2 C:GLU136 4.7 34.0 1.0
CE1 C:HIS253 4.7 34.5 1.0
ND1 C:HIS253 4.8 34.9 1.0
CD C:GLU134 4.9 45.9 1.0
CB C:GLU203 4.9 30.7 1.0
ND2 C:ASN194 5.0 29.2 1.0

Magnesium binding site 4 out of 15 in 2uu7

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Magnesium binding site 4 out of 15 in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg401

b:29.9
occ:1.00
 OE1 D:GLU203 1.9 39.0 1.0
OE1 D:GLU136 2.3 33.3 1.0
OE2 D:GLU196 2.4 36.1 1.0
CD D:GLU203 2.9 34.4 1.0
OE2 D:GLU203 3.2 40.6 1.0
CD D:GLU136 3.5 30.9 1.0
CD D:GLU196 3.5 33.9 1.0
OE2 D:GLU134 3.8 54.9 1.0
CG D:GLU136 4.1 30.3 1.0
CG D:GLU203 4.3 33.3 1.0
OE1 D:GLU196 4.3 34.9 1.0
CG D:GLU196 4.4 29.4 1.0
OE2 D:GLU136 4.5 34.1 1.0
CE1 D:HIS253 4.7 34.5 1.0
ND1 D:HIS253 4.7 34.8 1.0
CB D:GLU203 4.9 30.7 1.0
CD D:GLU134 5.0 45.9 1.0

Magnesium binding site 5 out of 15 in 2uu7

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Magnesium binding site 5 out of 15 in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg401

b:29.7
occ:1.00
 OE1 E:GLU203 2.0 38.9 1.0
OE1 E:GLU136 2.2 33.2 1.0
OE2 E:GLU196 2.4 36.0 1.0
CD E:GLU203 2.9 34.3 1.0
OE2 E:GLU203 3.3 40.6 1.0
CD E:GLU136 3.4 30.8 1.0
CD E:GLU196 3.4 33.9 1.0
OE2 E:GLU134 3.8 55.0 1.0
CG E:GLU136 4.1 30.3 1.0
OE1 E:GLU196 4.2 35.0 1.0
CG E:GLU203 4.2 33.3 1.0
CG E:GLU196 4.4 29.4 1.0
OE2 E:GLU136 4.4 34.1 1.0
CE1 E:HIS253 4.7 34.4 1.0
ND1 E:HIS253 4.7 34.6 1.0
CB E:GLU203 4.9 30.6 1.0
CD E:GLU134 5.0 45.9 1.0

Magnesium binding site 6 out of 15 in 2uu7

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Magnesium binding site 6 out of 15 in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg401

b:30.0
occ:1.00
 OE1 F:GLU203 2.1 38.9 1.0
OE2 F:GLU196 2.4 36.0 1.0
OE1 F:GLU136 2.5 33.4 1.0
CD F:GLU203 3.0 34.4 1.0
OE2 F:GLU203 3.2 40.6 1.0
CD F:GLU196 3.5 33.9 1.0
CD F:GLU136 3.6 30.9 1.0
OE2 F:GLU134 3.8 54.8 1.0
OE1 F:GLU196 4.2 34.9 1.0
CG F:GLU136 4.2 30.3 1.0
CG F:GLU203 4.3 33.3 1.0
CG F:GLU196 4.4 29.7 1.0
OE2 F:GLU136 4.5 34.1 1.0
CE1 F:HIS253 4.7 34.5 1.0
ND1 F:HIS253 4.7 35.0 1.0
CB F:GLU203 4.9 30.6 1.0
CD F:GLU134 5.0 45.9 1.0

Magnesium binding site 7 out of 15 in 2uu7

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Magnesium binding site 7 out of 15 in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg401

b:29.8
occ:1.00
 OE1 G:GLU203 1.9 38.9 1.0
OE1 G:GLU136 2.3 33.2 1.0
OE2 G:GLU196 2.5 36.3 1.0
CD G:GLU203 2.9 34.4 1.0
OE2 G:GLU203 3.2 40.7 1.0
CD G:GLU136 3.5 30.9 1.0
CD G:GLU196 3.6 34.0 1.0
OE2 G:GLU134 3.7 54.8 1.0
CG G:GLU136 4.1 30.3 1.0
CG G:GLU203 4.2 33.4 1.0
OE1 G:GLU196 4.3 34.9 1.0
OE2 G:GLU136 4.4 33.9 1.0
CG G:GLU196 4.4 29.4 1.0
ND1 G:HIS253 4.7 34.9 1.0
CE1 G:HIS253 4.7 34.5 1.0
CD G:GLU134 4.8 45.9 1.0
CB G:GLU203 4.9 30.7 1.0

Magnesium binding site 8 out of 15 in 2uu7

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Magnesium binding site 8 out of 15 in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg401

b:29.8
occ:1.00
 OE1 H:GLU203 1.9 38.9 1.0
OE2 H:GLU196 2.4 36.2 1.0
OE1 H:GLU136 2.4 33.3 1.0
CD H:GLU203 2.9 34.4 1.0
OE2 H:GLU203 3.2 40.8 1.0
CD H:GLU196 3.5 34.0 1.0
CD H:GLU136 3.5 30.9 1.0
OE2 H:GLU134 3.8 54.9 1.0
CG H:GLU136 4.2 30.3 1.0
OE1 H:GLU196 4.2 34.9 1.0
CG H:GLU203 4.2 33.5 1.0
CG H:GLU196 4.4 29.5 1.0
OE2 H:GLU136 4.6 33.9 1.0
CE1 H:HIS253 4.8 34.6 1.0
ND1 H:HIS253 4.8 34.9 1.0
CB H:GLU203 4.8 30.7 1.0
ND2 H:ASN194 4.9 29.1 1.0
CD H:GLU134 5.0 45.9 1.0

Magnesium binding site 9 out of 15 in 2uu7

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Magnesium binding site 9 out of 15 in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg401

b:30.2
occ:1.00
 OE1 I:GLU203 1.9 39.0 1.0
OE1 I:GLU136 2.3 33.2 1.0
OE2 I:GLU196 2.7 36.1 1.0
CD I:GLU203 2.9 34.4 1.0
OE2 I:GLU203 3.2 40.7 1.0
CD I:GLU136 3.5 30.9 1.0
CD I:GLU196 3.7 33.9 1.0
OE2 I:GLU134 3.7 55.0 1.0
CG I:GLU136 4.1 30.3 1.0
CG I:GLU203 4.2 33.5 1.0
OE1 I:GLU196 4.4 34.9 1.0
OE2 I:GLU136 4.5 34.2 1.0
CG I:GLU196 4.5 29.4 1.0
ND1 I:HIS253 4.6 34.9 1.0
CE1 I:HIS253 4.7 34.5 1.0
CD I:GLU134 4.8 46.0 1.0
CB I:GLU203 4.9 30.6 1.0

Magnesium binding site 10 out of 15 in 2uu7

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Magnesium binding site 10 out of 15 in the Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of Apo Glutamine Synthetase From Dog ( Canis Familiaris) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg401

b:29.6
occ:1.00
 OE1 J:GLU203 2.0 38.9 1.0
OE1 J:GLU136 2.4 33.3 1.0
OE2 J:GLU196 2.5 36.2 1.0
CD J:GLU203 2.9 34.3 1.0
OE2 J:GLU203 3.2 40.6 1.0
CD J:GLU136 3.6 30.8 1.0
CD J:GLU196 3.6 34.0 1.0
OE2 J:GLU134 3.7 55.0 1.0
CG J:GLU136 4.2 30.2 1.0
CG J:GLU203 4.3 33.4 1.0
OE1 J:GLU196 4.3 34.7 1.0
OE2 J:GLU136 4.5 34.0 1.0
CG J:GLU196 4.5 29.5 1.0
CE1 J:HIS253 4.7 34.3 1.0
ND1 J:HIS253 4.7 34.9 1.0
CD J:GLU134 4.9 45.9 1.0
CB J:GLU203 4.9 30.6 1.0

Reference:

W.W.Krajewski, R.Collins, L.Holmberg-Schiavone, T.A.Jones, T.Karlberg, S.L.Mowbray. Crystal Structures of Mammalian Glutamine Synthetases Illustrate Substrate-Induced Conformational Changes and Provide Opportunities For Drug and Herbicide Design. J.Mol.Biol. V. 375 217 2008.
ISSN: ISSN 0022-2836
PubMed: 18005987
DOI: 10.1016/J.JMB.2007.10.029
Page generated: Wed Aug 14 03:25:39 2024

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