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Magnesium in PDB 2uwp: Factor Xa Inhibitor Complex

Enzymatic activity of Factor Xa Inhibitor Complex

All present enzymatic activity of Factor Xa Inhibitor Complex:
3.4.21.6;

Protein crystallography data

The structure of Factor Xa Inhibitor Complex, PDB code: 2uwp was solved by R.J.Young, D.Brown, C.L.Burns-Kurtis, C.Chan, M.A.Convery, J.A.Hubbard, H.A.Kelly, A.J.Pateman, A.Patikis, S.Senger, G.P.Shah, J.R.Toomey, N.S.Watson, P.Zhou, J.H.Thorpe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.448, 71.963, 78.671, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 21.2

Other elements in 2uwp:

The structure of Factor Xa Inhibitor Complex also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Calcium (Ca) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Factor Xa Inhibitor Complex (pdb code 2uwp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Factor Xa Inhibitor Complex, PDB code: 2uwp:

Magnesium binding site 1 out of 1 in 2uwp

Go back to Magnesium Binding Sites List in 2uwp
Magnesium binding site 1 out of 1 in the Factor Xa Inhibitor Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Factor Xa Inhibitor Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1247

b:34.1
occ:1.00
O A:LYS224 2.2 31.6 1.0
O A:TYR185 2.2 32.1 1.0
O A:ARG222 2.2 36.0 1.0
O A:HOH2151 2.5 41.0 1.0
O A:ASP185A 2.6 37.3 1.0
O A:HOH2176 2.8 36.4 1.0
C A:LYS224 3.4 32.9 1.0
C A:TYR185 3.4 31.6 1.0
C A:ASP185A 3.4 36.6 1.0
C A:ARG222 3.4 37.2 1.0
N A:LYS224 3.6 35.9 1.0
CA A:ASP185A 3.9 37.3 1.0
CA A:LYS224 4.0 33.0 1.0
N A:ASP185A 4.1 35.1 1.0
N A:ARG222 4.1 33.3 1.0
C A:ALA221 4.1 34.9 1.0
N A:GLY223A 4.2 34.3 1.0
N A:THR185B 4.2 38.4 1.0
N A:LYS223 4.3 36.6 1.0
CA A:LYS223 4.3 37.2 1.0
O A:HOH2147 4.4 30.3 1.0
CA A:ARG222 4.4 36.1 1.0
O A:ALA221 4.4 36.9 1.0
C A:LYS223 4.4 36.5 1.0
N A:TYR225 4.4 31.2 1.0
CA A:ALA221 4.5 33.6 1.0
CA A:TYR185 4.5 31.0 1.0
CA A:THR185B 4.6 38.8 1.0
CB A:LYS224 4.6 33.8 1.0
C A:GLY223A 4.7 36.0 1.0
CA A:TYR225 4.7 29.4 1.0
N A:TYR185 4.8 29.3 1.0
O A:LYS186 4.8 39.1 1.0
CA A:GLY223A 4.9 35.6 1.0

Reference:

R.J.Young, D.Brown, C.L.Burns-Kurtis, C.Chan, M.A.Convery, J.A.Hubbard, H.A.Kelly, A.J.Pateman, A.Patikis, S.Senger, G.P.Shah, J.R.Toomey, N.S.Watson, P.Zhou. Selective and Dual Action Orally Active Inhibitors of Thrombin and Factor Xa. Bioorg.Med.Chem.Lett. V. 17 2927 2007.
ISSN: ISSN 0960-894X
PubMed: 17420122
DOI: 10.1016/J.BMCL.2007.03.080
Page generated: Mon Dec 14 07:39:32 2020

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