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Magnesium in PDB 2v4o: Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form

Enzymatic activity of Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form

All present enzymatic activity of Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form:
3.1.3.11; 3.1.3.5; 3.1.3.6;

Protein crystallography data

The structure of Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form, PDB code: 2v4o was solved by P.Anju, H.S.Savithri, M.R.N.Murthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 93.25 / 2.71
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 161.081, 95.299, 94.572, 90.00, 98.93, 90.00
R / Rfree (%) 18.952 / 25.428

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form (pdb code 2v4o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form, PDB code: 2v4o:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 2v4o

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Magnesium binding site 1 out of 4 in the Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1254

b:35.5
occ:1.00
 OD1 A:ASP9 2.1 51.5 1.0
O3 A:PO41255 2.1 41.8 0.5
ND2 A:ASN92 2.4 47.8 1.0
OD2 A:ASP8 2.5 45.7 1.0
OG A:SER39 2.6 44.0 1.0
CG A:ASP9 3.2 48.6 1.0
CB A:SER39 3.2 46.2 1.0
CG A:ASN92 3.4 45.2 1.0
CG A:ASP8 3.4 42.9 1.0
OD1 A:ASN92 3.6 44.8 1.0
P A:PO41255 3.6 41.3 0.5
OD2 A:ASP9 3.6 51.7 1.0
OD1 A:ASP8 3.6 46.2 1.0
CA A:SER39 4.0 46.9 1.0
O1 A:PO41255 4.1 37.8 0.5
O4 A:PO41255 4.2 39.9 0.5
CB A:ASP9 4.4 45.3 1.0
N A:ASP9 4.5 43.5 1.0
CA A:ASP9 4.5 44.6 1.0
OG1 A:THR106 4.6 46.6 1.0
O2 A:PO41255 4.6 37.8 0.5
O A:ALA93 4.6 44.0 1.0
C A:ASP8 4.6 43.0 1.0
N A:SER39 4.7 47.2 1.0
CB A:ASN92 4.8 45.6 1.0
CB A:ASP8 4.8 41.6 1.0
ND2 A:ASN37 4.8 42.7 1.0
O A:ASP8 4.8 43.7 1.0
OD1 A:ASN37 5.0 53.2 1.0
N A:ALA93 5.0 44.8 1.0

Magnesium binding site 2 out of 4 in 2v4o

Go back to Magnesium Binding Sites List in 2v4o
Magnesium binding site 2 out of 4 in the Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1254

b:59.3
occ:1.00
 ND2 B:ASN92 2.3 53.8 1.0
OD1 B:ASP9 2.3 64.3 1.0
OD2 B:ASP8 2.4 58.2 1.0
OG B:SER39 2.8 72.2 1.0
CG B:ASN92 3.1 52.4 1.0
OD1 B:ASN92 3.1 54.5 1.0
CG B:ASP9 3.3 61.1 1.0
CB B:SER39 3.4 71.5 1.0
CG B:ASP8 3.6 57.4 1.0
OD2 B:ASP9 3.6 62.5 1.0
O B:ALA93 4.3 51.1 1.0
OD1 B:ASN37 4.3 71.2 1.0
CG2 B:THR106 4.4 50.0 1.0
CB B:ASP8 4.4 57.5 1.0
OD1 B:ASP8 4.5 58.8 1.0
CB B:ASN92 4.6 50.5 1.0
CB B:ASP9 4.6 59.3 1.0
CA B:SER39 4.7 71.3 1.0
C B:ASP8 4.7 57.9 1.0
O B:ASP8 4.8 58.3 1.0
N B:ASP9 4.8 57.9 1.0
N B:ALA93 4.8 50.7 1.0
CA B:ASP9 4.9 58.4 1.0

Magnesium binding site 3 out of 4 in 2v4o

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Magnesium binding site 3 out of 4 in the Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1254

b:44.2
occ:1.00
 OD2 C:ASP8 2.2 50.3 1.0
ND2 C:ASN92 2.3 47.5 1.0
OD1 C:ASP9 2.5 50.0 1.0
OG C:SER39 2.5 57.8 1.0
CG C:ASP8 3.2 45.5 1.0
CG C:ASP9 3.2 48.6 1.0
CG C:ASN92 3.4 44.4 1.0
OD2 C:ASP9 3.5 52.9 1.0
OD1 C:ASP8 3.5 47.2 1.0
OD1 C:ASN92 3.7 44.4 1.0
CB C:SER39 3.9 56.0 1.0
O C:ALA93 4.2 47.1 1.0
N C:ASP9 4.5 45.6 1.0
CB C:ASP9 4.5 46.1 1.0
C C:ASP8 4.5 44.8 1.0
CB C:ASP8 4.6 44.0 1.0
CA C:ASP9 4.6 45.9 1.0
CB C:ASN92 4.7 44.7 1.0
CG2 C:THR106 4.7 40.4 1.0
CA C:SER39 4.8 55.3 1.0
O C:ASP8 4.8 45.6 1.0
N C:ALA93 4.9 46.3 1.0
ND2 C:ASN37 4.9 58.0 1.0
CA C:ASP8 5.0 44.1 1.0

Magnesium binding site 4 out of 4 in 2v4o

Go back to Magnesium Binding Sites List in 2v4o
Magnesium binding site 4 out of 4 in the Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Salmonella Typhimurium Sure at 2.75 Angstrom Resolution in Monoclinic Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1254

b:29.8
occ:1.00
 OD2 D:ASP8 1.8 52.2 1.0
O3 D:PO41256 2.3 32.1 0.5
ND2 D:ASN92 2.3 40.4 1.0
OD1 D:ASP9 2.6 50.0 1.0
OG D:SER39 2.7 36.8 1.0
CG D:ASP8 3.0 49.3 1.0
CB D:SER39 3.2 37.4 1.0
CG D:ASP9 3.2 44.4 1.0
OD2 D:ASP9 3.4 43.3 1.0
CG D:ASN92 3.5 39.5 1.0
P D:PO41256 3.5 36.4 0.5
CB D:ASP8 3.6 47.0 1.0
O1 D:PO41256 3.8 31.1 0.5
OD1 D:ASN92 3.8 46.5 1.0
CA D:SER39 3.8 38.1 1.0
OD1 D:ASP8 4.0 53.3 1.0
O4 D:PO41256 4.1 32.0 0.5
N D:ASP9 4.3 42.7 1.0
C D:ASP8 4.4 43.8 1.0
O D:HOH2002 4.4 53.4 1.0
CB D:ASP9 4.5 42.0 1.0
N D:SER39 4.5 37.6 1.0
CA D:ASP9 4.5 41.6 1.0
OD1 D:ASN37 4.6 40.1 1.0
CA D:ASP8 4.6 44.6 1.0
O D:ALA93 4.7 39.6 1.0
O2 D:PO41256 4.7 35.4 0.5
CG2 D:THR106 4.7 42.7 1.0
CB D:ASN92 4.8 39.5 1.0
O D:ASP8 4.8 43.8 1.0
N D:ALA93 4.8 40.2 1.0

Reference:

A.Pappachan, H.S.Savithri, M.R.N.Murthy. Structural and Functional Studies on A Mesophilic Stationary Phase Survival Protein (Sur E) From Salmonella Typhimurium Febs J. V. 275 5855 2008.
ISSN: ISSN 1742-464X
PubMed: 19021761
DOI: 10.1111/J.1742-4658.2008.06715.X
Page generated: Wed Aug 14 04:57:54 2024

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