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Magnesium in PDB 2v5v: W57E Flavodoxin From Anabaena

Protein crystallography data

The structure of W57E Flavodoxin From Anabaena, PDB code: 2v5v was solved by B.Herguedas, M.Martinez-Julvez, I.Perez-Dorado, G.Goni, M.Medina, J.A.Hermoso, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.48 / 1.88
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 37.848, 55.576, 70.253, 90.00, 91.17, 90.00
R / Rfree (%) 18.1 / 22.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the W57E Flavodoxin From Anabaena (pdb code 2v5v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the W57E Flavodoxin From Anabaena, PDB code: 2v5v:

Magnesium binding site 1 out of 1 in 2v5v

Go back to Magnesium Binding Sites List in 2v5v
Magnesium binding site 1 out of 1 in the W57E Flavodoxin From Anabaena


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of W57E Flavodoxin From Anabaena within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg171

b:46.1
occ:1.00
O A:HOH2111 1.9 49.2 1.0
O A:HOH2109 2.2 38.7 1.0
O A:HOH2106 2.3 39.7 1.0
O B:HOH2060 2.4 32.9 1.0
O B:HOH2061 2.4 39.1 1.0
O B:HOH2059 4.0 43.7 1.0
O A:GLN111 4.1 27.1 1.0
O A:HOH2110 4.2 46.1 1.0
O B:ASP146 4.2 37.6 1.0
OD1 B:ASN147 4.3 32.2 1.0
O A:HOH2107 4.3 26.6 1.0
NH2 A:ARG112 4.3 37.4 1.0
CG A:GLN111 4.5 36.2 1.0
O B:HOH2039 4.6 38.7 1.0
CD A:GLN111 4.9 39.4 1.0

Reference:

S.Frago, G.Goni, B.Herguedas, J.R.Peregrina, A.Serrano, I.Perez-Dorado, R.Molina, C.Gomez-Moreno, J.A.Hermoso, M.Martinez-Julvez, S.G.Mayhew, M.Medina. Tuning of the Fmn Binding and Oxido-Reduction Properties By Neighboring Side Chains in Anabaena Flavodoxin. Arch.Biochem.Biophys. V. 467 206 2007.
ISSN: ISSN 0003-9861
PubMed: 17904516
DOI: 10.1016/J.ABB.2007.08.024
Page generated: Wed Aug 14 04:59:13 2024

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