Magnesium in PDB 2v69: Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
Enzymatic activity of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
All present enzymatic activity of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E:
4.1.1.39;
Protein crystallography data
The structure of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E, PDB code: 2v69
was solved by
S.Karkehabadi,
S.Satagopan,
T.C.Taylor,
R.J.Spreitzer,
I.Andersson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
20.00 /
2.80
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
114.242,
169.140,
137.179,
90.00,
96.24,
90.00
|
|
R / Rfree (%)
|
19.7 /
22.8
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
(pdb code 2v69). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E, PDB code: 2v69:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 2v69
Go back to
Magnesium Binding Sites List in 2v69
Magnesium binding site 1 out
of 8 in the Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1470
b:47.4
occ:1.00
|
OQ1
|
A:KCX201
|
1.9
|
53.1
|
1.0
|
|
OD1
|
A:ASP203
|
1.9
|
50.1
|
1.0
|
|
OE1
|
A:GLU204
|
2.0
|
49.7
|
1.0
|
|
O3
|
A:CAP1471
|
2.2
|
53.5
|
1.0
|
|
O2
|
A:CAP1471
|
2.3
|
56.0
|
1.0
|
|
O7
|
A:CAP1471
|
2.3
|
56.9
|
1.0
|
|
C2
|
A:CAP1471
|
2.9
|
56.1
|
1.0
|
|
C
|
A:CAP1471
|
3.0
|
56.4
|
1.0
|
|
CX
|
A:KCX201
|
3.0
|
52.2
|
1.0
|
|
CG
|
A:ASP203
|
3.1
|
48.9
|
1.0
|
|
C3
|
A:CAP1471
|
3.1
|
55.5
|
1.0
|
|
CD
|
A:GLU204
|
3.1
|
49.8
|
1.0
|
|
OQ2
|
A:KCX201
|
3.5
|
53.4
|
1.0
|
|
NZ
|
A:LYS177
|
3.6
|
46.4
|
1.0
|
|
OE2
|
A:GLU204
|
3.6
|
50.6
|
1.0
|
|
N
|
A:GLU204
|
3.7
|
46.2
|
1.0
|
|
OD2
|
A:ASP203
|
3.8
|
51.4
|
1.0
|
|
CG2
|
A:THR173
|
3.9
|
49.4
|
1.0
|
|
NE2
|
A:HIS294
|
4.0
|
45.4
|
1.0
|
|
ND2
|
B:ASN123
|
4.0
|
51.2
|
1.0
|
|
CA
|
A:ASP203
|
4.0
|
46.7
|
1.0
|
|
NZ
|
A:LYS175
|
4.1
|
45.0
|
1.0
|
|
NZ
|
A:KCX201
|
4.1
|
49.9
|
1.0
|
|
CB
|
A:ASP203
|
4.1
|
47.1
|
1.0
|
|
O6
|
A:CAP1471
|
4.2
|
56.8
|
1.0
|
|
CG
|
A:GLU204
|
4.3
|
47.6
|
1.0
|
|
C
|
A:ASP203
|
4.4
|
46.4
|
1.0
|
|
C4
|
A:CAP1471
|
4.4
|
55.3
|
1.0
|
|
C1
|
A:CAP1471
|
4.4
|
56.1
|
1.0
|
|
CB
|
A:GLU204
|
4.4
|
46.1
|
1.0
|
|
OG1
|
A:THR173
|
4.4
|
49.6
|
1.0
|
|
CD2
|
A:HIS294
|
4.6
|
44.2
|
1.0
|
|
CA
|
A:GLU204
|
4.7
|
45.9
|
1.0
|
|
CB
|
A:THR173
|
4.7
|
49.2
|
1.0
|
|
C5
|
A:CAP1471
|
4.8
|
54.9
|
1.0
|
|
O1
|
A:CAP1471
|
4.9
|
54.5
|
1.0
|
|
CE1
|
A:HIS294
|
4.9
|
44.0
|
1.0
|
|
CE
|
A:LYS177
|
5.0
|
45.9
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 2v69
Go back to
Magnesium Binding Sites List in 2v69
Magnesium binding site 2 out
of 8 in the Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1470
b:47.8
occ:1.00
|
OQ1
|
B:KCX201
|
2.0
|
53.5
|
1.0
|
|
OD1
|
B:ASP203
|
2.0
|
50.0
|
1.0
|
|
OE1
|
B:GLU204
|
2.1
|
49.5
|
1.0
|
|
O7
|
B:CAP1471
|
2.2
|
56.7
|
1.0
|
|
O3
|
B:CAP1471
|
2.3
|
53.7
|
1.0
|
|
O2
|
B:CAP1471
|
2.3
|
55.5
|
1.0
|
|
C
|
B:CAP1471
|
2.9
|
56.4
|
1.0
|
|
C2
|
B:CAP1471
|
2.9
|
56.0
|
1.0
|
|
CG
|
B:ASP203
|
3.0
|
49.5
|
1.0
|
|
CD
|
B:GLU204
|
3.1
|
49.8
|
1.0
|
|
C3
|
B:CAP1471
|
3.1
|
55.7
|
1.0
|
|
CX
|
B:KCX201
|
3.1
|
52.8
|
1.0
|
|
OE2
|
B:GLU204
|
3.6
|
51.1
|
1.0
|
|
OQ2
|
B:KCX201
|
3.6
|
54.1
|
1.0
|
|
OD2
|
B:ASP203
|
3.6
|
52.2
|
1.0
|
|
NZ
|
B:LYS177
|
3.6
|
46.9
|
1.0
|
|
N
|
B:GLU204
|
3.7
|
46.3
|
1.0
|
|
CG2
|
B:THR173
|
3.9
|
49.4
|
1.0
|
|
NZ
|
B:LYS175
|
3.9
|
45.2
|
1.0
|
|
ND2
|
A:ASN123
|
4.0
|
51.0
|
1.0
|
|
NE2
|
B:HIS294
|
4.0
|
46.4
|
1.0
|
|
CA
|
B:ASP203
|
4.1
|
47.0
|
1.0
|
|
O6
|
B:CAP1471
|
4.1
|
56.8
|
1.0
|
|
CB
|
B:ASP203
|
4.1
|
47.5
|
1.0
|
|
NZ
|
B:KCX201
|
4.2
|
50.5
|
1.0
|
|
CG
|
B:GLU204
|
4.3
|
47.6
|
1.0
|
|
C1
|
B:CAP1471
|
4.4
|
56.1
|
1.0
|
|
C
|
B:ASP203
|
4.4
|
46.6
|
1.0
|
|
C4
|
B:CAP1471
|
4.4
|
56.0
|
1.0
|
|
CB
|
B:GLU204
|
4.5
|
46.3
|
1.0
|
|
OG1
|
B:THR173
|
4.6
|
49.5
|
1.0
|
|
CD2
|
B:HIS294
|
4.6
|
44.5
|
1.0
|
|
CA
|
B:GLU204
|
4.7
|
46.1
|
1.0
|
|
CB
|
B:THR173
|
4.7
|
49.4
|
1.0
|
|
C5
|
B:CAP1471
|
4.9
|
55.0
|
1.0
|
|
O1
|
B:CAP1471
|
4.9
|
55.2
|
1.0
|
|
CE
|
B:LYS177
|
4.9
|
46.0
|
1.0
|
|
CE1
|
B:HIS294
|
5.0
|
44.1
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 2v69
Go back to
Magnesium Binding Sites List in 2v69
Magnesium binding site 3 out
of 8 in the Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg1471
b:46.1
occ:1.00
|
OQ1
|
C:KCX201
|
1.8
|
53.4
|
1.0
|
|
OD1
|
C:ASP203
|
1.9
|
49.6
|
1.0
|
|
OE1
|
C:GLU204
|
2.1
|
49.5
|
1.0
|
|
O3
|
C:CAP1472
|
2.2
|
53.8
|
1.0
|
|
O2
|
C:CAP1472
|
2.3
|
56.2
|
1.0
|
|
O7
|
C:CAP1472
|
2.3
|
56.5
|
1.0
|
|
CX
|
C:KCX201
|
3.0
|
52.2
|
1.0
|
|
C2
|
C:CAP1472
|
3.0
|
56.0
|
1.0
|
|
C
|
C:CAP1472
|
3.0
|
56.2
|
1.0
|
|
CG
|
C:ASP203
|
3.0
|
48.3
|
1.0
|
|
CD
|
C:GLU204
|
3.1
|
49.9
|
1.0
|
|
C3
|
C:CAP1472
|
3.2
|
55.3
|
1.0
|
|
OQ2
|
C:KCX201
|
3.5
|
53.3
|
1.0
|
|
NZ
|
C:LYS177
|
3.6
|
46.4
|
1.0
|
|
OE2
|
C:GLU204
|
3.7
|
50.1
|
1.0
|
|
N
|
C:GLU204
|
3.7
|
45.9
|
1.0
|
|
OD2
|
C:ASP203
|
3.7
|
51.2
|
1.0
|
|
ND2
|
D:ASN123
|
4.0
|
50.9
|
1.0
|
|
NZ
|
C:KCX201
|
4.0
|
49.5
|
1.0
|
|
CG2
|
C:THR173
|
4.0
|
48.6
|
1.0
|
|
NE2
|
C:HIS294
|
4.0
|
45.1
|
1.0
|
|
CA
|
C:ASP203
|
4.0
|
46.4
|
1.0
|
|
CB
|
C:ASP203
|
4.1
|
46.8
|
1.0
|
|
NZ
|
C:LYS175
|
4.1
|
44.5
|
1.0
|
|
O6
|
C:CAP1472
|
4.2
|
56.6
|
1.0
|
|
CG
|
C:GLU204
|
4.3
|
47.9
|
1.0
|
|
OG1
|
C:THR173
|
4.3
|
49.4
|
1.0
|
|
C
|
C:ASP203
|
4.4
|
46.0
|
1.0
|
|
CB
|
C:GLU204
|
4.4
|
46.0
|
1.0
|
|
C4
|
C:CAP1472
|
4.4
|
54.7
|
1.0
|
|
C1
|
C:CAP1472
|
4.4
|
55.8
|
1.0
|
|
CD2
|
C:HIS294
|
4.6
|
44.3
|
1.0
|
|
CA
|
C:GLU204
|
4.7
|
45.5
|
1.0
|
|
CB
|
C:THR173
|
4.7
|
49.1
|
1.0
|
|
C5
|
C:CAP1472
|
4.8
|
54.5
|
1.0
|
|
CE1
|
C:HIS294
|
4.9
|
44.1
|
1.0
|
|
O1
|
C:CAP1472
|
5.0
|
54.2
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 2v69
Go back to
Magnesium Binding Sites List in 2v69
Magnesium binding site 4 out
of 8 in the Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg1475
b:48.0
occ:1.00
|
OD1
|
D:ASP203
|
1.8
|
50.0
|
1.0
|
|
OQ1
|
D:KCX201
|
2.0
|
52.8
|
1.0
|
|
OE1
|
D:GLU204
|
2.0
|
49.7
|
1.0
|
|
O7
|
D:CAP1476
|
2.3
|
56.7
|
1.0
|
|
O2
|
D:CAP1476
|
2.3
|
55.4
|
1.0
|
|
O3
|
D:CAP1476
|
2.4
|
53.5
|
1.0
|
|
CG
|
D:ASP203
|
3.0
|
48.7
|
1.0
|
|
C2
|
D:CAP1476
|
3.0
|
55.9
|
1.0
|
|
C
|
D:CAP1476
|
3.0
|
56.1
|
1.0
|
|
CX
|
D:KCX201
|
3.0
|
52.1
|
1.0
|
|
CD
|
D:GLU204
|
3.1
|
49.9
|
1.0
|
|
C3
|
D:CAP1476
|
3.2
|
55.2
|
1.0
|
|
OQ2
|
D:KCX201
|
3.5
|
53.8
|
1.0
|
|
NZ
|
D:LYS177
|
3.5
|
46.4
|
1.0
|
|
OE2
|
D:GLU204
|
3.5
|
50.8
|
1.0
|
|
N
|
D:GLU204
|
3.6
|
46.2
|
1.0
|
|
OD2
|
D:ASP203
|
3.7
|
51.4
|
1.0
|
|
CA
|
D:ASP203
|
3.9
|
46.8
|
1.0
|
|
CG2
|
D:THR173
|
3.9
|
49.7
|
1.0
|
|
CB
|
D:ASP203
|
4.0
|
47.0
|
1.0
|
|
NE2
|
D:HIS294
|
4.0
|
45.0
|
1.0
|
|
ND2
|
C:ASN123
|
4.1
|
51.0
|
1.0
|
|
NZ
|
D:KCX201
|
4.1
|
49.7
|
1.0
|
|
NZ
|
D:LYS175
|
4.2
|
45.1
|
1.0
|
|
O6
|
D:CAP1476
|
4.2
|
56.5
|
1.0
|
|
C
|
D:ASP203
|
4.3
|
46.5
|
1.0
|
|
CG
|
D:GLU204
|
4.3
|
47.4
|
1.0
|
|
C4
|
D:CAP1476
|
4.4
|
54.7
|
1.0
|
|
OG1
|
D:THR173
|
4.5
|
49.6
|
1.0
|
|
C1
|
D:CAP1476
|
4.5
|
56.2
|
1.0
|
|
CB
|
D:GLU204
|
4.5
|
46.1
|
1.0
|
|
CD2
|
D:HIS294
|
4.5
|
44.4
|
1.0
|
|
CA
|
D:GLU204
|
4.6
|
46.0
|
1.0
|
|
CB
|
D:THR173
|
4.8
|
49.1
|
1.0
|
|
C5
|
D:CAP1476
|
4.9
|
54.5
|
1.0
|
|
CE
|
D:LYS177
|
4.9
|
46.0
|
1.0
|
|
O
|
C:HOH1015
|
4.9
|
43.0
|
1.0
|
|
O1
|
D:CAP1476
|
5.0
|
55.0
|
1.0
|
|
CE1
|
D:HIS294
|
5.0
|
43.9
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 2v69
Go back to
Magnesium Binding Sites List in 2v69
Magnesium binding site 5 out
of 8 in the Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg1470
b:46.9
occ:1.00
|
OE1
|
E:GLU204
|
2.0
|
49.0
|
1.0
|
|
OQ1
|
E:KCX201
|
2.0
|
52.7
|
1.0
|
|
OD1
|
E:ASP203
|
2.0
|
50.1
|
1.0
|
|
O7
|
E:CAP1471
|
2.1
|
57.1
|
1.0
|
|
O3
|
E:CAP1471
|
2.2
|
53.9
|
1.0
|
|
O2
|
E:CAP1471
|
2.3
|
55.9
|
1.0
|
|
C
|
E:CAP1471
|
2.9
|
56.4
|
1.0
|
|
C2
|
E:CAP1471
|
2.9
|
55.9
|
1.0
|
|
CD
|
E:GLU204
|
3.1
|
49.1
|
1.0
|
|
C3
|
E:CAP1471
|
3.1
|
55.3
|
1.0
|
|
CX
|
E:KCX201
|
3.1
|
51.8
|
1.0
|
|
CG
|
E:ASP203
|
3.2
|
48.8
|
1.0
|
|
NZ
|
E:LYS177
|
3.6
|
46.4
|
1.0
|
|
OQ2
|
E:KCX201
|
3.6
|
53.0
|
1.0
|
|
OE2
|
E:GLU204
|
3.6
|
49.9
|
1.0
|
|
N
|
E:GLU204
|
3.7
|
46.2
|
1.0
|
|
ND2
|
F:ASN123
|
3.8
|
50.7
|
1.0
|
|
OD2
|
E:ASP203
|
3.8
|
51.5
|
1.0
|
|
NE2
|
E:HIS294
|
4.0
|
45.1
|
1.0
|
|
O6
|
E:CAP1471
|
4.1
|
56.9
|
1.0
|
|
CG2
|
E:THR173
|
4.1
|
49.4
|
1.0
|
|
NZ
|
E:LYS175
|
4.1
|
44.9
|
1.0
|
|
NZ
|
E:KCX201
|
4.2
|
49.7
|
1.0
|
|
CA
|
E:ASP203
|
4.2
|
46.8
|
1.0
|
|
CB
|
E:ASP203
|
4.2
|
47.1
|
1.0
|
|
CG
|
E:GLU204
|
4.3
|
47.5
|
1.0
|
|
C4
|
E:CAP1471
|
4.4
|
55.6
|
1.0
|
|
CB
|
E:GLU204
|
4.4
|
45.9
|
1.0
|
|
C1
|
E:CAP1471
|
4.4
|
55.9
|
1.0
|
|
C
|
E:ASP203
|
4.5
|
46.5
|
1.0
|
|
OG1
|
E:THR173
|
4.6
|
49.7
|
1.0
|
|
CD2
|
E:HIS294
|
4.7
|
44.0
|
1.0
|
|
CA
|
E:GLU204
|
4.7
|
45.8
|
1.0
|
|
C5
|
E:CAP1471
|
4.8
|
55.2
|
1.0
|
|
CB
|
E:THR173
|
4.9
|
49.2
|
1.0
|
|
O1
|
E:CAP1471
|
4.9
|
54.3
|
1.0
|
|
CE1
|
E:HIS294
|
4.9
|
43.9
|
1.0
|
|
CE
|
E:LYS177
|
5.0
|
45.5
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 2v69
Go back to
Magnesium Binding Sites List in 2v69
Magnesium binding site 6 out
of 8 in the Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg1470
b:47.4
occ:1.00
|
OD1
|
F:ASP203
|
2.0
|
50.7
|
1.0
|
|
OE1
|
F:GLU204
|
2.0
|
49.3
|
1.0
|
|
OQ1
|
F:KCX201
|
2.0
|
53.3
|
1.0
|
|
O2
|
F:CAP1471
|
2.1
|
55.6
|
1.0
|
|
O3
|
F:CAP1471
|
2.2
|
53.5
|
1.0
|
|
O7
|
F:CAP1471
|
2.3
|
57.0
|
1.0
|
|
C2
|
F:CAP1471
|
2.9
|
55.9
|
1.0
|
|
C
|
F:CAP1471
|
3.0
|
56.3
|
1.0
|
|
CG
|
F:ASP203
|
3.0
|
49.1
|
1.0
|
|
C3
|
F:CAP1471
|
3.1
|
55.3
|
1.0
|
|
CD
|
F:GLU204
|
3.1
|
49.8
|
1.0
|
|
CX
|
F:KCX201
|
3.2
|
51.6
|
1.0
|
|
NZ
|
F:LYS177
|
3.6
|
46.4
|
1.0
|
|
OE2
|
F:GLU204
|
3.6
|
50.7
|
1.0
|
|
OQ2
|
F:KCX201
|
3.6
|
52.8
|
1.0
|
|
OD2
|
F:ASP203
|
3.7
|
51.1
|
1.0
|
|
N
|
F:GLU204
|
3.7
|
46.3
|
1.0
|
|
ND2
|
E:ASN123
|
3.9
|
51.0
|
1.0
|
|
CG2
|
F:THR173
|
3.9
|
49.3
|
1.0
|
|
NE2
|
F:HIS294
|
4.0
|
45.1
|
1.0
|
|
NZ
|
F:LYS175
|
4.0
|
45.2
|
1.0
|
|
CA
|
F:ASP203
|
4.1
|
46.7
|
1.0
|
|
CB
|
F:ASP203
|
4.1
|
47.3
|
1.0
|
|
NZ
|
F:KCX201
|
4.2
|
49.2
|
1.0
|
|
O6
|
F:CAP1471
|
4.2
|
56.5
|
1.0
|
|
C1
|
F:CAP1471
|
4.3
|
56.0
|
1.0
|
|
CG
|
F:GLU204
|
4.3
|
47.6
|
1.0
|
|
C4
|
F:CAP1471
|
4.4
|
55.4
|
1.0
|
|
C
|
F:ASP203
|
4.4
|
46.4
|
1.0
|
|
OG1
|
F:THR173
|
4.5
|
49.0
|
1.0
|
|
CB
|
F:GLU204
|
4.5
|
46.2
|
1.0
|
|
CD2
|
F:HIS294
|
4.6
|
44.3
|
1.0
|
|
CA
|
F:GLU204
|
4.7
|
46.0
|
1.0
|
|
CB
|
F:THR173
|
4.8
|
49.0
|
1.0
|
|
C5
|
F:CAP1471
|
4.8
|
54.9
|
1.0
|
|
O1
|
F:CAP1471
|
4.8
|
54.3
|
1.0
|
|
CE1
|
F:HIS294
|
4.9
|
44.4
|
1.0
|
|
CE
|
F:LYS177
|
5.0
|
45.9
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 2v69
Go back to
Magnesium Binding Sites List in 2v69
Magnesium binding site 7 out
of 8 in the Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg1470
b:46.1
occ:1.00
|
OQ1
|
G:KCX201
|
1.8
|
52.7
|
1.0
|
|
OE1
|
G:GLU204
|
1.9
|
49.9
|
1.0
|
|
OD1
|
G:ASP203
|
2.0
|
50.2
|
1.0
|
|
O3
|
G:CAP1471
|
2.0
|
53.4
|
1.0
|
|
O2
|
G:CAP1471
|
2.3
|
56.5
|
1.0
|
|
O7
|
G:CAP1471
|
2.3
|
56.9
|
1.0
|
|
C2
|
G:CAP1471
|
2.9
|
56.1
|
1.0
|
|
C3
|
G:CAP1471
|
3.0
|
55.5
|
1.0
|
|
CX
|
G:KCX201
|
3.0
|
52.1
|
1.0
|
|
C
|
G:CAP1471
|
3.0
|
56.3
|
1.0
|
|
CD
|
G:GLU204
|
3.1
|
50.0
|
1.0
|
|
CG
|
G:ASP203
|
3.2
|
49.2
|
1.0
|
|
OQ2
|
G:KCX201
|
3.5
|
53.3
|
1.0
|
|
NZ
|
G:LYS177
|
3.6
|
46.1
|
1.0
|
|
OE2
|
G:GLU204
|
3.7
|
50.6
|
1.0
|
|
N
|
G:GLU204
|
3.7
|
46.2
|
1.0
|
|
NE2
|
G:HIS294
|
3.8
|
45.3
|
1.0
|
|
ND2
|
H:ASN123
|
3.9
|
51.1
|
1.0
|
|
OD2
|
G:ASP203
|
3.9
|
51.5
|
1.0
|
|
CG2
|
G:THR173
|
4.0
|
49.4
|
1.0
|
|
NZ
|
G:KCX201
|
4.1
|
49.9
|
1.0
|
|
CA
|
G:ASP203
|
4.1
|
46.9
|
1.0
|
|
NZ
|
G:LYS175
|
4.2
|
45.1
|
1.0
|
|
O6
|
G:CAP1471
|
4.2
|
56.3
|
1.0
|
|
CB
|
G:ASP203
|
4.2
|
47.2
|
1.0
|
|
CG
|
G:GLU204
|
4.3
|
47.4
|
1.0
|
|
C4
|
G:CAP1471
|
4.3
|
55.1
|
1.0
|
|
CB
|
G:GLU204
|
4.3
|
46.0
|
1.0
|
|
C1
|
G:CAP1471
|
4.4
|
55.9
|
1.0
|
|
CD2
|
G:HIS294
|
4.4
|
43.5
|
1.0
|
|
C
|
G:ASP203
|
4.4
|
46.4
|
1.0
|
|
OG1
|
G:THR173
|
4.5
|
49.2
|
1.0
|
|
CA
|
G:GLU204
|
4.6
|
45.9
|
1.0
|
|
C5
|
G:CAP1471
|
4.7
|
54.5
|
1.0
|
|
CE1
|
G:HIS294
|
4.7
|
44.1
|
1.0
|
|
CB
|
G:THR173
|
4.8
|
49.3
|
1.0
|
|
O1
|
G:CAP1471
|
4.9
|
54.2
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 2v69
Go back to
Magnesium Binding Sites List in 2v69
Magnesium binding site 8 out
of 8 in the Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Chlamydomonas Reinhardtii Rubisco with A Large- Subunit Mutation D473E within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg1470
b:47.0
occ:1.00
|
OQ1
|
H:KCX201
|
1.9
|
53.1
|
1.0
|
|
OD1
|
H:ASP203
|
1.9
|
50.3
|
1.0
|
|
OE1
|
H:GLU204
|
2.1
|
50.2
|
1.0
|
|
O3
|
H:CAP1471
|
2.2
|
54.0
|
1.0
|
|
O7
|
H:CAP1471
|
2.3
|
56.8
|
1.0
|
|
O2
|
H:CAP1471
|
2.3
|
55.6
|
1.0
|
|
C2
|
H:CAP1471
|
2.9
|
56.0
|
1.0
|
|
C
|
H:CAP1471
|
3.0
|
56.2
|
1.0
|
|
CX
|
H:KCX201
|
3.0
|
52.4
|
1.0
|
|
CG
|
H:ASP203
|
3.0
|
48.7
|
1.0
|
|
C3
|
H:CAP1471
|
3.1
|
55.6
|
1.0
|
|
CD
|
H:GLU204
|
3.1
|
50.0
|
1.0
|
|
OQ2
|
H:KCX201
|
3.5
|
53.3
|
1.0
|
|
NZ
|
H:LYS177
|
3.5
|
46.1
|
1.0
|
|
OE2
|
H:GLU204
|
3.7
|
50.7
|
1.0
|
|
N
|
H:GLU204
|
3.7
|
46.1
|
1.0
|
|
OD2
|
H:ASP203
|
3.7
|
51.3
|
1.0
|
|
NE2
|
H:HIS294
|
3.9
|
45.4
|
1.0
|
|
CG2
|
H:THR173
|
4.0
|
49.5
|
1.0
|
|
ND2
|
G:ASN123
|
4.0
|
50.6
|
1.0
|
|
NZ
|
H:LYS175
|
4.0
|
44.9
|
1.0
|
|
CA
|
H:ASP203
|
4.0
|
46.5
|
1.0
|
|
CB
|
H:ASP203
|
4.1
|
46.9
|
1.0
|
|
NZ
|
H:KCX201
|
4.1
|
50.3
|
1.0
|
|
O6
|
H:CAP1471
|
4.2
|
56.6
|
1.0
|
|
CG
|
H:GLU204
|
4.3
|
47.5
|
1.0
|
|
C4
|
H:CAP1471
|
4.4
|
55.1
|
1.0
|
|
CB
|
H:GLU204
|
4.4
|
46.1
|
1.0
|
|
C1
|
H:CAP1471
|
4.4
|
56.2
|
1.0
|
|
OG1
|
H:THR173
|
4.4
|
49.6
|
1.0
|
|
C
|
H:ASP203
|
4.4
|
46.2
|
1.0
|
|
CD2
|
H:HIS294
|
4.5
|
44.2
|
1.0
|
|
CA
|
H:GLU204
|
4.7
|
45.9
|
1.0
|
|
CB
|
H:THR173
|
4.7
|
49.1
|
1.0
|
|
C5
|
H:CAP1471
|
4.8
|
54.3
|
1.0
|
|
O1
|
H:CAP1471
|
4.9
|
54.5
|
1.0
|
|
CE1
|
H:HIS294
|
4.9
|
44.0
|
1.0
|
|
CE
|
H:LYS177
|
5.0
|
46.2
|
1.0
|
|
Reference:
S.Karkehabadi,
S.Satagopan,
T.C.Taylor,
R.J.Spreitzer,
I.Andersson.
Structural Analysis of Altered Large-Subunit Loop-6-Carboxy-Terminus Interactions That Influence Catalytic Efficiency and CO2-O2 Specificity of Ribulose-1,5-Bisphosphate Carboxylase Oxygenase Biochemistry V. 46 11080 2007.
ISSN: ISSN 0006-2960
PubMed: 17824672
DOI: 10.1021/BI701063F
Page generated: Wed Aug 14 05:00:02 2024
|
