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Magnesium in PDB 2v7q: The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1.

Enzymatic activity of The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1.

All present enzymatic activity of The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1.:
3.6.1.14; 3.6.1.34;

Protein crystallography data

The structure of The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1., PDB code: 2v7q was solved by J.R.Gledhill, M.G.Montgomery, A.G.W.Leslie, J.E.Walker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.19 / 2.1
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 262.534, 103.271, 135.559, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 24.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1. (pdb code 2v7q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1., PDB code: 2v7q:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 2v7q

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Magnesium binding site 1 out of 5 in the The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1512

b:27.4
occ:1.00
 O A:HOH2284 2.1 30.5 1.0
O A:HOH2285 2.1 26.4 1.0
O A:HOH2286 2.1 29.2 1.0
O2B A:ATP1511 2.1 27.5 1.0
OG1 A:THR176 2.2 29.4 1.0
O2G A:ATP1511 2.2 29.6 0.8
CB A:THR176 3.2 33.9 1.0
PB A:ATP1511 3.4 27.0 1.0
PG A:ATP1511 3.4 39.0 0.8
O3B A:ATP1511 3.7 31.3 1.0
OD2 A:ASP269 4.0 26.3 1.0
N A:THR176 4.0 30.3 1.0
OD1 A:ASP269 4.1 30.4 1.0
O A:HOH2143 4.2 30.1 1.0
O A:HOH2169 4.2 30.4 1.0
O1G A:ATP1511 4.2 33.5 0.8
CA A:THR176 4.2 31.1 1.0
CG2 A:THR176 4.3 34.4 1.0
O1A A:ATP1511 4.3 31.5 1.0
O A:HOH2170 4.3 31.1 1.0
O1B A:ATP1511 4.4 28.3 1.0
O3A A:ATP1511 4.4 31.1 1.0
CG A:ASP269 4.5 26.6 1.0
O3G A:ATP1511 4.6 39.2 0.8
PA A:ATP1511 4.7 29.9 1.0
O A:HOH2174 4.7 40.2 1.0
O A:HOH2283 4.7 35.6 1.0
O2A A:ATP1511 4.9 31.8 1.0

Magnesium binding site 2 out of 5 in 2v7q

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Magnesium binding site 2 out of 5 in the The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1512

b:27.8
occ:1.00
 O B:HOH2292 2.0 24.0 1.0
O B:HOH2294 2.0 30.3 1.0
OG1 B:THR176 2.1 25.6 1.0
O B:HOH2293 2.2 27.5 1.0
O2G B:ATP1511 2.2 35.8 1.0
O2B B:ATP1511 2.2 23.3 1.0
CB B:THR176 3.1 27.9 1.0
PG B:ATP1511 3.3 36.3 1.0
PB B:ATP1511 3.3 27.9 1.0
O3B B:ATP1511 3.4 31.4 1.0
N B:THR176 4.0 24.4 1.0
O1G B:ATP1511 4.0 34.1 1.0
OD1 B:ASP269 4.1 26.2 1.0
O B:HOH2287 4.1 28.1 1.0
CA B:THR176 4.1 26.9 1.0
CG2 B:THR176 4.1 27.2 1.0
O1A B:ATP1511 4.1 27.0 1.0
OD2 B:ASP269 4.2 31.7 1.0
O B:HOH2191 4.2 33.4 1.0
O B:HOH2155 4.3 28.8 1.0
O1B B:ATP1511 4.4 25.3 1.0
O3A B:ATP1511 4.4 27.7 1.0
O B:HOH2189 4.4 37.8 1.0
O3G B:ATP1511 4.5 37.1 1.0
CG B:ASP269 4.6 29.6 1.0
PA B:ATP1511 4.6 27.4 1.0
O B:HOH2288 4.6 34.6 1.0
O B:HOH2291 4.9 30.7 1.0
O2A B:ATP1511 4.9 24.4 1.0
O B:HOH2240 5.0 23.4 1.0

Magnesium binding site 3 out of 5 in 2v7q

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Magnesium binding site 3 out of 5 in the The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1512

b:29.5
occ:1.00
 OG1 C:THR176 2.0 30.8 1.0
O C:HOH2296 2.1 28.8 1.0
O C:HOH2295 2.1 30.2 1.0
O C:HOH2294 2.2 30.6 1.0
O2G C:ATP1511 2.2 26.8 0.8
O2B C:ATP1511 2.2 25.4 1.0
CB C:THR176 3.1 31.5 1.0
PG C:ATP1511 3.3 34.7 0.8
PB C:ATP1511 3.4 30.0 1.0
O3B C:ATP1511 3.7 31.1 1.0
O1G C:ATP1511 3.9 33.5 0.8
N C:THR176 4.0 28.8 1.0
CA C:THR176 4.1 29.6 1.0
OD2 C:ASP269 4.1 35.2 1.0
OD1 C:ASP269 4.1 36.0 1.0
O C:HOH2148 4.1 35.0 1.0
CG2 C:THR176 4.2 29.1 1.0
O C:HOH2178 4.2 27.0 1.0
O1A C:ATP1511 4.2 32.6 1.0
O C:HOH2292 4.3 26.9 1.0
O3A C:ATP1511 4.4 28.7 1.0
O C:HOH2287 4.4 41.9 1.0
O1B C:ATP1511 4.5 30.0 1.0
CG C:ASP269 4.5 33.3 1.0
O C:HOH2293 4.6 30.1 1.0
O3G C:ATP1511 4.6 37.5 0.8
PA C:ATP1511 4.6 30.6 1.0
O C:HOH2284 4.8 33.9 1.0
O2A C:ATP1511 4.9 26.5 1.0

Magnesium binding site 4 out of 5 in 2v7q

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Magnesium binding site 4 out of 5 in the The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1479

b:24.8
occ:1.00
 O2B D:ADP1478 2.0 23.0 1.0
O D:HOH2366 2.1 24.9 1.0
OG1 D:THR163 2.1 27.5 1.0
O D:HOH2367 2.1 24.4 1.0
O D:HOH2364 2.1 25.9 1.0
O D:HOH2365 2.1 25.2 1.0
CB D:THR163 3.2 22.8 1.0
PB D:ADP1478 3.3 24.1 1.0
O1B D:ADP1478 3.6 25.5 1.0
OE1 D:GLU188 4.1 39.4 1.0
O D:HOH2156 4.1 23.4 1.0
N D:THR163 4.1 23.2 1.0
OD2 D:ASP256 4.1 27.9 1.0
NH1 D:ARG189 4.1 28.8 1.0
OE2 D:GLU192 4.2 24.6 1.0
CG2 D:THR163 4.2 24.7 1.0
CA D:THR163 4.2 23.6 1.0
O1A D:ADP1478 4.2 24.3 1.0
O3A D:ADP1478 4.3 22.6 1.0
OD1 D:ASP256 4.3 27.9 1.0
O3B D:ADP1478 4.4 22.8 1.0
OE1 D:GLU192 4.4 28.6 1.0
PA D:ADP1478 4.5 27.7 1.0
O D:HOH2155 4.6 33.1 1.0
O2A D:ADP1478 4.6 28.1 1.0
CG D:ASP256 4.7 30.1 1.0
CD D:GLU192 4.7 26.6 1.0
CD D:GLU188 4.7 35.7 1.0
O D:HOH2363 4.7 31.6 1.0
O D:HOH2144 4.8 33.3 1.0
CE D:LYS162 4.8 18.6 1.0
CB D:LYS162 4.9 21.3 1.0

Magnesium binding site 5 out of 5 in 2v7q

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Magnesium binding site 5 out of 5 in the The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Structure of F1-Atpase Inhibited By I1-60HIS, A Monomeric Form of the Inhibitor Protein, IF1. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1476

b:27.5
occ:1.00
 O2B F:ADP1475 2.0 27.6 1.0
O F:HOH2316 2.1 26.6 1.0
OG1 F:THR163 2.1 33.1 1.0
O F:HOH2315 2.1 25.4 1.0
O F:HOH2314 2.2 20.9 1.0
O F:HOH2313 2.2 25.5 1.0
CB F:THR163 3.3 29.2 1.0
PB F:ADP1475 3.3 28.1 1.0
O1B F:ADP1475 3.7 29.0 1.0
NH1 F:ARG189 4.0 30.0 1.0
OD2 F:ASP256 4.0 28.4 1.0
OE2 F:GLU192 4.0 24.4 1.0
OE1 F:GLU188 4.1 45.6 1.0
N F:THR163 4.1 25.7 1.0
O1A F:ADP1475 4.2 33.0 1.0
O3A F:ADP1475 4.2 27.3 1.0
CA F:THR163 4.3 27.0 1.0
O F:HOH2148 4.3 36.6 1.0
CG2 F:THR163 4.3 28.2 1.0
OD1 F:ASP256 4.3 28.4 1.0
O F:HOH2147 4.4 27.7 1.0
O3B F:ADP1475 4.4 28.9 1.0
NH1 B:ARG373 4.4 60.5 1.0
PA F:ADP1475 4.5 28.6 1.0
OE1 F:GLU192 4.5 30.7 1.0
O2A F:ADP1475 4.6 33.0 1.0
CG F:ASP256 4.6 28.2 1.0
CD F:GLU192 4.7 29.3 1.0
O F:HOH2312 4.7 30.6 1.0
CD F:GLU188 4.7 40.7 1.0
CE F:LYS162 4.9 24.2 1.0
CB F:LYS162 4.9 22.5 1.0

Reference:

J.R.Gledhill, M.G.Montgomery, A.G.W.Leslie, J.E.Walker. How the Regulatory Protein, IF1, Inhibits F1- Atpase From Bovine Mitochondria. Proc.Nat.Acad.Sci.Usa V. 104 15671 2007.
ISSN: ISSN 0027-8424
PubMed: 17895376
DOI: 10.1073/PNAS.0707326104
Page generated: Wed Aug 14 05:01:45 2024

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