Magnesium in PDB 2vbu: Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp

All present enzymatic activity of Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp:
2.7.1.161;

The structure of Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp, PDB code: 2vbu was solved by M.D.Hartmann, M.Ammelburg, S.Djuranovic, J.Martin, A.N.Lupas, K.Zeth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.7
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	104.845, 104.845, 32.802, 90.00, 90.00, 90.00
R / Rfree (%)	16.1 / 21.2

The binding sites of Magnesium atom in the Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp (pdb code 2vbu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp, PDB code: 2vbu:

Magnesium binding site 1 out of 1 in the Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Riboflavin Kinase MJ0056 From Methanocaldococcus Jannaschii in Complex with Cdp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1134 b:15.1 occ:1.00 O2B A:CDP1133 2.0 16.6 1.0 O A:THR43 2.0 14.7 1.0 OG1 A:THR43 2.1 14.9 1.0 O A:HOH2146 2.1 14.3 1.0 O1A A:CDP1133 2.1 15.6 1.0 OD1 A:ASN45 2.1 14.8 1.0 C A:THR43 3.0 14.9 1.0 PB A:CDP1133 3.1 16.1 1.0 CG A:ASN45 3.1 13.8 1.0 CB A:THR43 3.2 14.6 1.0 PA A:CDP1133 3.3 15.7 1.0 CA A:THR43 3.4 14.7 1.0 O3B A:CDP1133 3.5 15.6 1.0 O3A A:CDP1133 3.5 14.9 1.0 N A:THR43 3.5 12.3 1.0 ND2 A:ASN45 3.7 18.9 1.0 OE2 A:GLU107 3.9 18.9 1.0 O A:HOH2150 3.9 15.7 1.0 O5' A:CDP1133 4.1 14.7 1.0 N A:LEU44 4.1 14.2 1.0 N A:ASN45 4.2 14.9 1.0 N A:GLY18 4.3 15.8 1.0 CA A:GLY18 4.4 18.5 1.0 O A:HOH2029 4.4 21.7 1.0 CB A:ASN45 4.4 14.5 1.0 O1B A:CDP1133 4.4 17.5 1.0 CG2 A:THR43 4.4 14.7 1.0 O2A A:CDP1133 4.5 15.8 1.0 C A:LEU44 4.6 14.0 1.0 CA A:LEU44 4.6 15.7 1.0 CG A:GLU107 4.7 17.9 1.0 CA A:ASN45 4.7 13.8 1.0 CD A:GLU107 4.7 30.0 1.0 C2' A:CDP1133 4.8 16.3 1.0 C A:GLY42 4.8 13.1 1.0

M.Ammelburg, M.D.Hartmann, S.Djuranovic, V.Alva, K.K.Koretke, J.Martin, G.Sauer, V.Truffault, K.Zeth, A.N.Lupas, M.Coles. A Ctp-Dependent Archaeal Riboflavin Kinase Forms A Bridge in the Evolution of Cradle-Loop Barrels. Structure V. 15 1577 2007.
ISSN: ISSN 0969-2126
PubMed: 18073108
DOI: 10.1016/J.STR.2007.09.027