Magnesium in PDB 2vfj: Structure of the A20 Ovarian Tumour (Otu) Domain

All present enzymatic activity of Structure of the A20 Ovarian Tumour (Otu) Domain:
3.4.19.12;

The structure of Structure of the A20 Ovarian Tumour (Otu) Domain, PDB code: 2vfj was solved by D.Komander, D.Barford, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.286 / 3.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	84.964, 83.023, 164.940, 90.00, 98.08, 90.00
R / Rfree (%)	20.44 / 24.29

The binding sites of Magnesium atom in the Structure of the A20 Ovarian Tumour (Otu) Domain (pdb code 2vfj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the A20 Ovarian Tumour (Otu) Domain, PDB code: 2vfj:

Magnesium binding site 1 out of 1 in the Structure of the A20 Ovarian Tumour (Otu) Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the A20 Ovarian Tumour (Otu) Domain within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1364 b:0.5 occ:1.00 OE1 D:GLU311 2.6 0.1 1.0 OE2 D:GLU300 3.6 0.3 1.0 O2 C:SO41361 3.7 0.2 1.0 CD D:GLU311 3.8 0.1 1.0 OE1 C:GLU338 4.1 0.4 1.0 OE2 C:GLU338 4.1 0.7 1.0 OD1 D:ASN326 4.2 92.4 1.0 CD C:GLU338 4.2 0.0 1.0 CG D:GLU311 4.3 1.0 1.0 NZ D:LYS304 4.3 0.9 1.0 ND2 D:ASN326 4.5 89.3 1.0 CG D:ASN326 4.7 83.9 1.0 NZ C:LYS20 4.8 0.1 1.0 OE2 D:GLU311 4.8 0.2 1.0 CD D:GLU300 4.8 0.9 1.0

D.Komander, D.Barford. Structure of the A20 Otu Domain and Mechanistic Insights Into Deubiquitination Biochem.J. V. 409 77 2008.
ISSN: ISSN 0264-6021
PubMed: 17961127
DOI: 10.1042/BJ20071399