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Magnesium in PDB 2vh5: Crystal Structure of Hras(G12V) - Anti-Ras Fv (Disulfide Free Mutant) Complex

Protein crystallography data

The structure of Crystal Structure of Hras(G12V) - Anti-Ras Fv (Disulfide Free Mutant) Complex, PDB code: 2vh5 was solved by T.Tanaka, R.L.Williams, T.H.Rabbitts, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.18 / 2.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 75.863, 85.403, 63.084, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 29.1

Other elements in 2vh5:

The structure of Crystal Structure of Hras(G12V) - Anti-Ras Fv (Disulfide Free Mutant) Complex also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Hras(G12V) - Anti-Ras Fv (Disulfide Free Mutant) Complex (pdb code 2vh5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Hras(G12V) - Anti-Ras Fv (Disulfide Free Mutant) Complex, PDB code: 2vh5:

Magnesium binding site 1 out of 1 in 2vh5

Go back to Magnesium Binding Sites List in 2vh5
Magnesium binding site 1 out of 1 in the Crystal Structure of Hras(G12V) - Anti-Ras Fv (Disulfide Free Mutant) Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Hras(G12V) - Anti-Ras Fv (Disulfide Free Mutant) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Mg1168

b:12.0
occ:1.00
OG R:SER17 1.7 37.8 1.0
O1B R:GTP1167 1.8 32.1 1.0
O2G R:GTP1167 1.9 35.2 1.0
OG1 R:THR35 1.9 37.4 1.0
CB R:SER17 3.0 37.5 1.0
PG R:GTP1167 3.1 34.7 1.0
PB R:GTP1167 3.2 33.3 1.0
CB R:THR35 3.2 37.2 1.0
O3B R:GTP1167 3.5 34.1 1.0
O3G R:GTP1167 3.6 35.9 1.0
N R:SER17 3.8 37.2 1.0
N R:THR35 3.9 37.3 1.0
CA R:SER17 3.9 37.3 1.0
OD2 R:ASP57 4.0 37.9 1.0
OD1 R:ASP57 4.1 37.1 1.0
NH1 H:ARG53 4.1 31.2 1.0
CA R:THR35 4.1 37.2 1.0
O2A R:GTP1167 4.1 36.3 1.0
O2B R:GTP1167 4.2 33.1 1.0
CG2 R:THR35 4.2 36.9 1.0
O3A R:GTP1167 4.2 33.8 1.0
O1G R:GTP1167 4.3 34.9 1.0
O R:THR58 4.4 39.6 1.0
CG R:ASP57 4.4 38.8 1.0
PA R:GTP1167 4.5 35.6 1.0
O1A R:GTP1167 4.6 35.4 1.0
O R:ASP33 4.8 37.0 1.0
CB R:LYS16 4.8 36.7 1.0
C R:PRO34 4.9 37.2 1.0
C R:LYS16 4.9 36.7 1.0
CE R:LYS16 5.0 36.1 1.0

Reference:

T.Tanaka, T.H.Rabbitts. Functional Intracellular Antibody Fragments Do Not Require Invariant Intra-Domain Disulfide Bonds. J.Mol.Biol. V. 376 749 2008.
ISSN: ISSN 0022-2836
PubMed: 18187153
DOI: 10.1016/J.JMB.2007.11.085
Page generated: Wed Aug 14 05:12:23 2024

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