Magnesium in PDB 2vii: PSPF1-275-Mg-Amp

The structure of PSPF1-275-Mg-Amp, PDB code: 2vii was solved by N.Joly, M.Rappas, M.Buck, X.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	98.39 / 2.85
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	113.607, 113.607, 39.358, 90.00, 90.00, 120.00
R / Rfree (%)	18.6 / 24.1

The binding sites of Magnesium atom in the PSPF1-275-Mg-Amp (pdb code 2vii). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the PSPF1-275-Mg-Amp, PDB code: 2vii:

Magnesium binding site 1 out of 1 in the PSPF1-275-Mg-Amp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of PSPF1-275-Mg-Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg261 b:57.6 occ:1.00 O3P A:AMP260 2.8 51.1 1.0 OE2 A:GLU43 3.0 35.6 1.0 CB A:GLU43 3.7 22.3 1.0 O A:HOH2009 3.8 53.7 1.0 CD A:GLU43 4.0 32.8 1.0 OD1 A:ASP107 4.0 34.2 1.0 P A:AMP260 4.1 50.5 1.0 O2P A:AMP260 4.3 50.6 1.0 CG A:GLU43 4.4 26.9 1.0 NH2 A:ARG227 4.5 27.9 1.0 O A:HOH2107 4.6 44.3 1.0 C5' A:AMP260 4.6 56.4 1.0 N A:GLU43 4.7 18.7 1.0 CA A:GLU43 4.8 20.8 1.0 O5' A:AMP260 4.8 53.4 1.0 O A:HOH2015 4.9 35.8 1.0 OE1 A:GLU43 5.0 34.0 1.0

N.Joly, M.Rappas, M.Buck, X.Zhang. Trapping of A Transcription Complex Using A New Nucleotide Analogue: Amp Aluminium Fluoride J.Mol.Biol. V. 375 1206 2008.
ISSN: ISSN 0022-2836
PubMed: 18082766
DOI: 10.1016/J.JMB.2007.11.050