Magnesium in PDB 2vn2: Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426

The structure of Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426, PDB code: 2vn2 was solved by C.-Y.Huang, Y.-W.Chang, W.-T.Chen, Y.-J.Sun, C.-D.Hsiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.49 / 2.3
Space group	F 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	116.514, 124.707, 157.230, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 22.3

The binding sites of Magnesium atom in the Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426 (pdb code 2vn2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426, PDB code: 2vn2:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1120 b:35.2 occ:1.00 NE2 A:HIS109 2.2 45.7 1.0 OE1 A:GLN113 2.3 22.7 1.0 ND1 A:HIS24 2.3 30.1 1.0 NE2 A:GLN113 2.3 37.1 1.0 OE1 A:GLN27 2.4 51.7 1.0 NE2 A:GLN27 2.6 53.5 1.0 CD A:GLN27 2.6 50.2 1.0 CD A:GLN113 2.6 34.9 1.0 CE1 A:HIS24 2.8 30.1 1.0 CD2 A:HIS109 3.1 43.5 1.0 CE1 A:HIS109 3.2 44.6 1.0 CG A:HIS24 3.6 27.4 1.0 CG A:GLN27 3.9 45.3 1.0 NE2 A:HIS24 4.1 29.7 1.0 CB A:GLN27 4.2 40.0 1.0 CB A:HIS24 4.3 26.2 1.0 CG A:GLN113 4.3 33.3 1.0 CG A:HIS109 4.3 41.2 1.0 ND1 A:HIS109 4.3 44.0 1.0 CD2 A:HIS24 4.5 27.0 1.0 O A:GLY23 4.8 28.6 1.0 CA A:HIS24 4.9 25.6 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1120 b:21.8 occ:1.00 NE2 B:GLN113 2.2 58.9 1.0 OE1 B:GLN113 2.3 59.5 1.0 CD B:GLN113 2.3 57.3 1.0 OE1 B:GLN27 2.4 26.0 1.0 NE2 B:HIS24 2.6 33.4 1.0 CD2 B:HIS24 2.7 30.7 1.0 NE2 B:HIS109 2.8 40.7 1.0 O B:HOH2039 3.0 39.1 1.0 CD2 B:HIS109 3.3 39.6 1.0 CG B:GLN113 3.5 53.7 1.0 CD B:GLN27 3.7 36.5 1.0 CB B:GLN113 3.7 49.2 1.0 CE1 B:HIS109 3.8 39.4 1.0 CE1 B:HIS24 3.9 33.2 1.0 CG B:HIS24 4.0 30.0 1.0 NE2 B:GLN27 4.4 40.7 1.0 CG B:HIS109 4.5 38.4 1.0 ND1 B:HIS24 4.6 32.6 1.0 ND1 B:HIS109 4.7 39.1 1.0 CD2 B:LEU110 4.7 29.3 1.0 O B:HIS109 4.9 35.9 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1120 b:18.4 occ:1.00 NE2 C:HIS109 2.2 36.0 1.0 OE1 C:GLN27 2.3 55.7 1.0 OE1 C:GLN113 2.3 35.2 1.0 NE2 C:GLN27 2.3 53.9 1.0 ND1 C:HIS24 2.4 29.1 1.0 CD C:GLN27 2.4 50.6 1.0 CD C:GLN113 2.8 41.6 1.0 CE1 C:HIS109 3.0 35.0 1.0 CE1 C:HIS24 3.1 27.5 1.0 NE2 C:GLN113 3.2 43.9 1.0 CD2 C:HIS109 3.3 34.7 1.0 CG C:HIS24 3.5 27.5 1.0 CG C:GLN27 3.7 46.4 1.0 CG C:GLN113 3.9 40.6 1.0 CB C:HIS24 3.9 26.8 1.0 CB C:GLN27 4.1 40.1 1.0 ND1 C:HIS109 4.2 35.1 1.0 NE2 C:HIS24 4.4 27.2 1.0 CG C:HIS109 4.4 34.0 1.0 CD2 C:HIS24 4.6 28.3 1.0 CA C:HIS24 4.6 26.4 1.0 O C:GLY23 4.8 27.2 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the N-Terminal Domain of Dnad Protein From Geobacillus Kaustophilus HTA426 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1120 b:23.7 occ:1.00 OE1 D:GLN27 2.1 48.5 1.0 NE2 D:HIS109 2.1 37.6 1.0 NE2 D:GLN27 2.3 45.5 1.0 OE1 D:GLN113 2.3 42.1 1.0 CD D:GLN27 2.4 45.6 1.0 ND1 D:HIS24 2.5 31.9 1.0 CE1 D:HIS109 3.0 37.1 1.0 CD D:GLN113 3.2 45.0 1.0 CE1 D:HIS24 3.2 32.7 1.0 CD2 D:HIS109 3.2 36.0 1.0 NE2 D:GLN113 3.4 44.4 1.0 CG D:GLN27 3.6 42.5 1.0 CG D:HIS24 3.6 30.2 1.0 CB D:GLN27 3.9 37.9 1.0 CB D:HIS24 4.1 26.7 1.0 ND1 D:HIS109 4.2 36.4 1.0 CG D:HIS109 4.3 35.0 1.0 NE2 D:HIS24 4.4 32.9 1.0 CA D:HIS24 4.6 26.1 1.0 CG D:GLN113 4.6 43.3 1.0 CD2 D:HIS24 4.7 30.7 1.0 O D:HIS24 4.9 26.0 1.0 O D:GLY23 4.9 27.0 1.0

C.-Y.Huang, Y.-W.Chang, W.-T.Chen. Crystal Structure of the N-Terminal Domain of Geobacillus Kaustophilus HTA426 Dnad Protein. Biochem.Biophys.Res.Commun. V. 375 220 2008.
ISSN: ISSN 0006-291X
PubMed: 18703019
DOI: 10.1016/J.BBRC.2008.07.160