Magnesium in PDB 2vvg: Crystal Structure of the G.Intestinalis Kinesin 2 GIKIN2A Motor Domain

The structure of Crystal Structure of the G.Intestinalis Kinesin 2 GIKIN2A Motor Domain, PDB code: 2vvg was solved by J.C.Hoeng, J.Loewe, S.C.Dawson, W.Z.Cande, M.S.Sagolla, J.J.Mancuso, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50 / 1.60
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	44.875, 48.223, 72.021, 89.30, 87.52, 84.29
R / Rfree (%)	20.29 / 22.39

The binding sites of Magnesium atom in the Crystal Structure of the G.Intestinalis Kinesin 2 GIKIN2A Motor Domain (pdb code 2vvg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the G.Intestinalis Kinesin 2 GIKIN2A Motor Domain, PDB code: 2vvg:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the G.Intestinalis Kinesin 2 GIKIN2A Motor Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the G.Intestinalis Kinesin 2 GIKIN2A Motor Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1352 b:9.9 occ:1.00 OG1 A:THR104 2.1 12.8 1.0 O1B A:ADP1351 2.2 9.8 1.0 O A:HOH2083 2.2 24.0 1.0 O A:HOH2200 2.2 21.6 1.0 O A:HOH2290 2.3 17.9 1.0 O A:HOH2293 2.3 19.2 1.0 CB A:THR104 3.1 11.9 1.0 PB A:ADP1351 3.3 11.0 1.0 O3B A:ADP1351 3.5 12.7 1.0 N A:THR104 4.0 9.4 1.0 O2A A:ADP1351 4.1 15.3 1.0 O A:HOH2201 4.1 19.3 1.0 CA A:THR104 4.2 8.6 1.0 CG2 A:THR104 4.2 13.0 1.0 OD2 A:ASP241 4.2 14.0 1.0 O3A A:ADP1351 4.3 11.3 1.0 O A:HOH2156 4.3 47.1 1.0 OD1 A:ASP241 4.3 15.9 1.0 O2B A:ADP1351 4.4 10.3 1.0 O A:HOH2082 4.6 14.6 1.0 PA A:ADP1351 4.6 12.3 1.0 CG A:ASP241 4.7 17.3 1.0 O A:HOH2294 4.8 26.3 1.0 O1A A:ADP1351 4.9 13.8 1.0 CE A:LYS103 4.9 10.0 1.0 O A:HOH2176 4.9 26.9 1.0 O A:HOH2178 4.9 51.5 1.0 CB A:LYS103 4.9 8.1 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the G.Intestinalis Kinesin 2 GIKIN2A Motor Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the G.Intestinalis Kinesin 2 GIKIN2A Motor Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1352 b:12.8 occ:1.00 O B:HOH2197 2.2 16.9 1.0 OG1 B:THR104 2.2 16.3 1.0 O1B B:ADP1351 2.3 11.4 1.0 O B:HOH2282 2.3 25.9 1.0 O B:HOH2085 2.4 34.1 1.0 O B:HOH2285 2.4 22.1 1.0 CB B:THR104 3.3 13.1 1.0 PB B:ADP1351 3.4 12.4 1.0 O3B B:ADP1351 3.5 15.6 1.0 O B:HOH2199 3.9 19.5 1.0 O B:HOH2160 4.1 44.1 1.0 N B:THR104 4.1 11.3 1.0 O2A B:ADP1351 4.2 19.1 1.0 CA B:THR104 4.3 9.5 1.0 OD2 B:ASP241 4.3 16.9 1.0 CG2 B:THR104 4.3 12.4 1.0 OD1 B:ASP241 4.4 18.8 1.0 O3A B:ADP1351 4.4 11.9 1.0 O B:HOH2083 4.4 15.2 1.0 O2B B:ADP1351 4.5 11.0 1.0 O B:HOH2179 4.6 30.1 1.0 CG B:ASP241 4.7 19.7 1.0 PA B:ADP1351 4.8 15.0 1.0 O B:HOH2284 4.8 22.3 1.0 CE B:LYS103 4.9 11.6 1.0 CB B:LYS103 5.0 10.1 1.0

J.C.Hoeng, S.C.Dawson, S.A.House, M.S.Sagolla, J.K.Pham, J.J.Mancuso, J.Loewe, W.Z.Cande. High-Resolution Crystal Structure and in Vivo Function of A Kinesin-2 Homologue in Giardia Intestinalis. Mol.Biol.Cell V. 19 3124 2008.
ISSN: ISSN 1059-1524
PubMed: 18463165
DOI: 10.1091/MBC.E07-11-1156