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Magnesium in PDB 2vze: Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A (L64P Mutation) in Complex with Amp

Enzymatic activity of Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A (L64P Mutation) in Complex with Amp

All present enzymatic activity of Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A (L64P Mutation) in Complex with Amp:
6.2.1.2;

Protein crystallography data

The structure of Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A (L64P Mutation) in Complex with Amp, PDB code: 2vze was solved by W.W.Yue, G.T.Kochan, E.S.Pilka, C.Bhatia, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, M.Wikstrom, C.Bountra, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.16 / 2.45
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 97.730, 97.730, 384.600, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 24.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A (L64P Mutation) in Complex with Amp (pdb code 2vze). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A (L64P Mutation) in Complex with Amp, PDB code: 2vze:

Magnesium binding site 1 out of 1 in 2vze

Go back to Magnesium Binding Sites List in 2vze
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A (L64P Mutation) in Complex with Amp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Acyl-Coa Synthetase Medium-Chain Family Member 2A (L64P Mutation) in Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1570

b:13.4
occ:1.00
 O C:VAL488 2.4 2.0 1.0
O C:HIS485 2.8 2.0 1.0
O C:MET483 2.9 2.0 1.0
C C:VAL488 3.5 2.0 1.0
C C:MET483 3.7 2.0 1.0
C C:HIS485 3.8 2.0 1.0
CA C:MET483 3.9 2.0 1.0
N C:VAL488 4.0 2.0 1.0
CA C:VAL488 4.1 2.0 1.0
CB C:VAL488 4.1 2.0 1.0
CA C:PRO486 4.3 2.0 1.0
CE C:MET483 4.3 2.0 1.0
N C:HIS485 4.5 2.0 1.0
N C:PRO486 4.5 2.0 1.0
SD C:MET483 4.5 2.0 1.0
N C:VAL489 4.5 2.0 1.0
C C:PRO486 4.5 2.0 1.0
CB C:MET483 4.6 2.0 1.0
O C:LEU482 4.6 2.0 1.0
O C:PRO486 4.7 2.0 1.0
CA C:VAL489 4.7 2.0 1.0
CA C:HIS485 4.8 2.0 1.0
N C:GLU484 4.8 2.0 1.0
C C:GLU484 4.9 2.0 1.0
CG1 C:VAL488 4.9 2.0 1.0

Reference:

G.Kochan, E.S.Pilka, F.V.Delft, U.Oppermann, W.W.Yue. Structural Snapshots For the Conformation- Dependent Catalysis By Human Medium-Chain Acyl- Coenzyme A Synthetase ACSM2A. J.Mol.Biol. V. 388 997 2009.
ISSN: ISSN 0022-2836
PubMed: 19345228
DOI: 10.1016/J.JMB.2009.03.064
Page generated: Sun Aug 10 15:34:58 2025

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