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Magnesium in PDB 2w4j: X-Ray Structure of A Dap-Kinase 2-277

Enzymatic activity of X-Ray Structure of A Dap-Kinase 2-277

All present enzymatic activity of X-Ray Structure of A Dap-Kinase 2-277:
2.7.11.1;

Protein crystallography data

The structure of X-Ray Structure of A Dap-Kinase 2-277, PDB code: 2w4j was solved by I.De Diego, J.Kuper, F.Lehmann, M.Wilmanns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 88.39 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.844, 62.336, 88.345, 90.00, 90.00, 90.00
R / Rfree (%) 13.1 / 15.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of A Dap-Kinase 2-277 (pdb code 2w4j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of A Dap-Kinase 2-277, PDB code: 2w4j:

Magnesium binding site 1 out of 1 in 2w4j

Go back to Magnesium Binding Sites List in 2w4j
Magnesium binding site 1 out of 1 in the X-Ray Structure of A Dap-Kinase 2-277


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of A Dap-Kinase 2-277 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1280

b:12.1
occ:1.00
O A:HOH2350 2.0 16.1 1.0
O2B A:ADP1278 2.0 14.1 1.0
O2A A:ADP1278 2.0 11.9 1.0
O A:HOH2199 2.1 15.0 1.0
OD2 A:ASP161 2.1 10.8 1.0
OD1 A:ASN144 2.3 11.5 1.0
CG A:ASP161 3.1 9.6 1.0
CG A:ASN144 3.2 10.6 1.0
PB A:ADP1278 3.3 13.6 1.0
PA A:ADP1278 3.3 11.3 1.0
ND2 A:ASN144 3.5 11.4 1.0
CB A:ASP161 3.6 9.9 1.0
O3A A:ADP1278 3.6 12.1 1.0
O3B A:ADP1278 3.9 18.2 1.0
O A:HOH2348 4.0 23.8 1.0
OE2 A:GLU143 4.1 20.5 1.0
O3' A:ADP1278 4.1 12.8 1.0
OD1 A:ASP161 4.1 10.6 1.0
O5' A:ADP1278 4.3 11.5 1.0
O A:HOH2192 4.3 26.5 1.0
O A:HOH2035 4.3 24.6 1.0
C5' A:ADP1278 4.3 10.8 1.0
O1A A:ADP1278 4.3 9.9 1.0
O1B A:ADP1278 4.6 16.5 1.0
CG A:GLU143 4.6 15.3 1.0
CB A:ASN144 4.6 10.1 1.0
C3' A:ADP1278 4.6 11.6 1.0
CD A:GLU143 4.6 17.9 1.0
OD2 A:ASP139 4.7 15.2 1.0
O A:GLU143 4.8 13.3 1.0
O A:HOH2349 4.9 35.3 1.0
C4' A:ADP1278 5.0 11.6 1.0
CA A:ASP161 5.0 9.2 1.0

Reference:

I.De Diego, J.Kuper, F.Lehmann, M.Wilmanns. X-Ray Structure of A Dap-Kinase Calmodulin Complex To Be Published.
Page generated: Mon Dec 14 07:43:27 2020

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