Magnesium in PDB 2w8d: Distinct and Essential Morphogenic Functions For Wall- and Lipo-Teichoic Acids in Bacillus Subtilis

The structure of Distinct and Essential Morphogenic Functions For Wall- and Lipo-Teichoic Acids in Bacillus Subtilis, PDB code: 2w8d was solved by K.Schirner, J.Marles-Wright, R.J.Lewis, J.Errington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	141.42 / 2.35
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.627, 54.408, 140.783, 90.00, 90.97, 90.00
R / Rfree (%)	17 / 23.5

The binding sites of Magnesium atom in the Distinct and Essential Morphogenic Functions For Wall- and Lipo-Teichoic Acids in Bacillus Subtilis (pdb code 2w8d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Distinct and Essential Morphogenic Functions For Wall- and Lipo-Teichoic Acids in Bacillus Subtilis, PDB code: 2w8d:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Distinct and Essential Morphogenic Functions For Wall- and Lipo-Teichoic Acids in Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Distinct and Essential Morphogenic Functions For Wall- and Lipo-Teichoic Acids in Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1636 b:14.9 occ:1.00 O1P A:TPO297 2.0 19.7 1.0 OE2 A:GLU253 2.1 15.9 1.0 OD2 A:ASP471 2.1 17.0 1.0 OG1 A:TPO297 2.2 18.5 1.0 NE2 A:HIS472 2.2 15.0 1.0 OE1 A:GLU253 2.2 14.1 1.0 CD A:GLU253 2.5 16.1 1.0 P A:TPO297 2.7 21.8 1.0 CE1 A:HIS472 3.1 14.3 1.0 CG A:ASP471 3.1 17.9 1.0 CD2 A:HIS472 3.3 10.2 1.0 OD1 A:ASP471 3.4 18.8 1.0 CB A:TPO297 3.4 17.0 1.0 O2P A:TPO297 3.8 21.4 1.0 O3P A:TPO297 3.8 17.9 1.0 CG2 A:TPO297 3.9 14.2 1.0 CA A:TPO297 3.9 17.3 1.0 CG A:GLU253 4.0 15.2 1.0 N A:TPO297 4.0 18.0 1.0 NE2 A:HIS412 4.2 31.9 1.0 ND1 A:HIS472 4.2 14.1 1.0 CG A:HIS472 4.3 16.9 1.0 CB A:ASP471 4.4 16.3 1.0 OG A:SER254 4.4 16.0 1.0 N A:SER254 4.5 15.8 1.0 O A:HOH2006 4.5 22.6 1.0 O A:HOH2004 4.5 19.5 1.0 CA A:GLU253 4.7 15.6 1.0 CB A:GLU253 4.8 15.9 1.0 CD2 A:HIS412 4.8 30.3 1.0 CE1 A:HIS412 4.8 32.1 1.0 C A:LYS296 5.0 19.6 1.0

Magnesium binding site 2 out of 2 in the Distinct and Essential Morphogenic Functions For Wall- and Lipo-Teichoic Acids in Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Distinct and Essential Morphogenic Functions For Wall- and Lipo-Teichoic Acids in Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1636 b:12.2 occ:1.00 O1P B:TPO297 1.9 23.7 1.0 OE2 B:GLU253 2.1 21.6 1.0 OD2 B:ASP471 2.1 16.2 1.0 OG1 B:TPO297 2.2 20.9 1.0 OE1 B:GLU253 2.2 17.8 1.0 NE2 B:HIS472 2.3 15.3 1.0 CD B:GLU253 2.5 19.4 1.0 P B:TPO297 2.7 23.5 1.0 CG B:ASP471 3.1 17.6 1.0 CE1 B:HIS472 3.2 15.7 1.0 CD2 B:HIS472 3.3 16.0 1.0 CB B:TPO297 3.4 19.0 1.0 OD1 B:ASP471 3.5 15.6 1.0 O2P B:TPO297 3.7 23.7 1.0 O3P B:TPO297 3.8 17.0 1.0 CG2 B:TPO297 3.9 15.6 1.0 CA B:TPO297 3.9 18.8 1.0 CG B:GLU253 4.0 18.4 1.0 N B:TPO297 4.0 19.9 1.0 NE2 B:HIS412 4.1 31.4 1.0 ND1 B:HIS472 4.3 16.1 1.0 CB B:ASP471 4.3 18.7 1.0 CG B:HIS472 4.4 17.8 1.0 O B:HOH2007 4.4 24.5 1.0 CE1 B:HIS412 4.4 32.7 1.0 O B:HOH2006 4.4 21.6 1.0 OG B:SER254 4.5 18.5 1.0 N B:SER254 4.5 17.9 1.0 CB B:GLU253 4.8 17.8 1.0 CA B:GLU253 4.9 18.4 1.0 CD2 B:HIS412 4.9 29.6 1.0 C B:LYS296 5.0 21.5 1.0

K.Schirner, J.Marles-Wright, R.J.Lewis, J.Errington. Distinct and Essential Morphogenic Functions For Wall- and Lipo-Teichoic Acids in Bacillus Subtilis Embo J. V. 28 830 2009.
ISSN: ISSN 0261-4189
PubMed: 19229300
DOI: 10.1038/EMBOJ.2009.25