Magnesium in PDB 2wcj: Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol

The structure of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol, PDB code: 2wcj was solved by G.Robertson, J.-J.Zhou, X.He, J.A.Pickett, L.M.Field, N.H.Keep, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.50 / 1.40
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	33.073, 33.073, 172.294, 90.00, 90.00, 120.00
R / Rfree (%)	17.6 / 22.8

The binding sites of Magnesium atom in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol (pdb code 2wcj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol, PDB code: 2wcj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1142 b:21.9 occ:1.00 O A:HOH2107 1.9 19.9 1.0 O A:HOH2106 2.1 27.6 1.0 OD1 A:ASP106 2.1 14.2 1.0 CG A:ASP106 3.1 10.2 1.0 CB A:ASP106 3.6 9.3 1.0 OD2 A:ASP106 4.2 12.1 1.0 NE A:ARG46 4.2 10.3 1.0 NH2 A:ARG46 4.5 11.5 1.0 O A:HOH2104 4.6 25.9 1.0 CA A:ASP106 4.7 10.2 1.0 CZ A:ARG46 4.8 9.3 1.0 O A:HOH2110 4.8 32.5 1.0

Magnesium binding site 2 out of 6 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1143 b:17.5 occ:1.00 O A:HOH2022 2.3 21.4 1.0 O A:GLU22 2.4 14.0 1.0 O A:HOH2016 2.5 32.5 1.0 C A:GLU22 3.4 12.1 1.0 O A:HOH2021 4.0 18.4 1.0 N A:SER23 4.3 10.8 1.0 CA A:GLU22 4.3 12.0 1.0 O A:HOH2024 4.3 23.5 1.0 CA A:SER23 4.4 10.6 1.0 C A:SER23 4.4 12.1 1.0 N A:GLY24 4.7 10.7 1.0 O A:HOH2007 4.7 21.4 1.0 O A:GLU21 4.8 12.9 1.0 O A:SER23 4.8 12.7 1.0

Magnesium binding site 3 out of 6 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1144 b:31.1 occ:1.00 OE2 A:GLU32 2.0 32.6 1.0 O A:HOH2038 2.0 27.0 1.0 OD1 A:ASP31 2.1 23.9 1.0 CG A:ASP31 3.0 20.8 1.0 CD A:GLU32 3.0 28.5 1.0 O A:HOH2036 3.1 38.9 1.0 OD2 A:ASP31 3.3 18.1 1.0 CG A:GLU32 3.6 23.3 1.0 OE1 A:GLU32 4.1 28.5 1.0 O A:ASP31 4.4 17.2 1.0 CB A:ASP31 4.4 15.7 1.0 C A:ASP31 4.7 15.3 1.0 CB A:GLU32 5.0 16.7 1.0

Magnesium binding site 4 out of 6 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1145 b:30.8 occ:1.00 OE2 A:GLU18 2.4 20.2 1.0 CD A:GLU18 3.1 17.2 1.0 OE1 A:GLU18 3.3 21.1 1.0 O A:HOH2013 4.3 15.9 1.0 O A:LYS14 4.5 18.8 1.0 CG A:GLU18 4.5 14.3 1.0 CB A:GLU18 5.0 14.6 1.0

Magnesium binding site 5 out of 6 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1146 b:35.3 occ:1.00 O A:HOH2077 2.0 28.0 1.0 OE1 A:GLU75 2.1 30.1 1.0 O A:HOH2074 2.3 39.5 1.0 OD1 A:ASN72 2.4 13.6 1.0 CD A:GLU75 3.3 23.3 1.0 CG A:ASN72 3.4 11.3 1.0 O A:HOH2025 3.9 24.2 1.0 OE2 A:GLU75 4.0 30.1 1.0 CA A:ASN72 4.1 9.0 1.0 O A:HOH2073 4.2 13.9 1.0 CB A:ASN72 4.2 9.2 1.0 CG A:GLU75 4.3 12.3 1.0 ND2 A:ASN72 4.4 13.1 1.0 CB A:GLU75 4.4 9.8 1.0 N A:ASN72 4.6 8.3 1.0 CG1 A:VAL71 4.6 10.8 1.0 O A:VAL71 4.8 8.1 1.0 C A:VAL71 4.9 7.6 1.0

Magnesium binding site 6 out of 6 in the Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Bmori GOBP2 (General Odorant Binding Protein 2) with (10E,12Z)-Tetradecadien-1-Ol within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1148 b:24.3 occ:1.00 O A:HOH2060 2.1 25.2 1.0 O A:HOH2067 2.1 22.6 1.0 O A:HOH2061 2.2 18.1 1.0 O A:MET62 4.1 13.4 1.0 OD1 A:ASN57 4.1 15.0 1.0 O A:HOH2014 4.4 22.5 1.0 OG A:SER60 4.5 20.2 1.0 CG A:ASN57 4.7 12.4 1.0 O A:ASN57 4.7 16.0 1.0 CA A:SER60 4.7 11.3 1.0 CB A:SER60 4.9 14.1 1.0 CB A:ASN57 4.9 13.3 1.0

J.-J.Zhou, G.Robertson, X.He, S.Dufour, A.M.Hooper, J.A.Pickett, N.H.Keep, L.M.Field. Characterisation of Bombyx Mori Odorant-Binding Proteins Reveals That A General Odorant-Binding Protein Discriminates Between Sex Pheromone Components. J.Mol.Biol. V. 389 529 2009.
ISSN: ISSN 0022-2836
PubMed: 19371749
DOI: 10.1016/J.JMB.2009.04.015